def test_AddingSequenceForExistingEntryProducesNoError(self):
with GeneSequenceApp.app.test_request_context("/"):
GeneSequenceApp.app.preprocess_request()
seq = Sequence.add("422900783", "ACGTACGTACGTACGT")
self.assertEqual("422900783", seq.GenBank_ID)
self.assertEqual(0, seq.Sequence_ID)
self.assertEqual("ACGTACGTACGTACGT", seq.Sequence)
self.assertTrue(
datetime_within_range(seq.date_added(), datetime.datetime.now(), datetime.timedelta(seconds=1))
)
def test_CreateFromSeqRecord(self):
with GeneSequenceApp.app.test_request_context("/"):
GeneSequenceApp.app.preprocess_request()
with open(__location__ + "/testfiles/422900759.pickle", "rb") as f:
record = pickle.load(f)
entry = GenBankEntry.create_from_seqrecord(record, "AcSp1")
self.assertEqual("422900759", entry.GenBank_ID)
self.assertEqual("JX978171.1", entry.Accession_Number)
self.assertEqual(
"Latrodectus hesperus clone 28K13 aciniform spidroin 1 (AcSp1) gene, complete cds.", entry.Desc
)
self.assertEqual("Latrodectus", entry.Genus)
self.assertEqual("hesperus", entry.Species)
self.assertEqual("AcSp1", entry.Silk_Type)
self.assertTrue(
datetime_within_range(entry.date_added(), datetime.datetime.now(), datetime.timedelta(seconds=1))
)
