def create_case_widget(self):
controller = self.controller
if controller.ds is None:
return
by_signature = Checkbox(
description='Cases indicated by signature?',
value=self.by_signature
)
case_id = Text(description='* Analysis for case:')
if 'biological_constraints' not in controller.options:
bio_constraints = ''
else:
bio_constraints = ', '.join(controller.defaults('biological_constraints'))
constraints = Textarea(description='Biological constraints:',
value=bio_constraints)
button = Button(description='Create Analysis')
button.on_click(self.create_report)
button.case_id = case_id
button.by_signature = by_signature
button.constraints = constraints
wi = VBox(children=[by_signature,
case_id,
constraints,
button])
return ('Analyze Case', wi)
def colocalization_widget(self):
controller = self.controller
cases = Textarea(description='* Cases to co-localize:')
by_signature = Checkbox(description='Cases indicated by signature?',
value=self.by_signature)
slice_variables = Textarea(description='* Slice variables:')
if 'biological_constraints' not in controller.options:
bio_constraints = ''
else:
bio_constraints = ', '.join(controller.defaults('biological_constraints'))
constraints = Textarea(description='Biological constraints:',
value=bio_constraints)
button = Button(description='Create Co-Localization')
button.on_click(self.make_colocalization)
button.cases = cases
button.by_signature = by_signature
button.slice_variables = slice_variables
button.constraints = constraints
wi = VBox(children=[cases,
by_signature,
slice_variables,
constraints,
button])
return ('Co-localizations', wi)