def __init__(self, macroNode, name='Noname'): Network.__init__(self, name) self.macroNode = macroNode self._originalNodes = [] # list of nodes that belong to a node # library macro. The list is populated # upon adding the macro to a network # and is used for saving macro networks self._originalConnections = [] # list of connections that belong to a
# # $Header: /opt/cvs/CADD/workflows/virtualScreening/VinaVSlocal_0.1_net.py,v 1.1 2011/04/15 16:19:40 nadya Exp $ # # $Id: VinaVSlocal_0.1_net.py,v 1.1 2011/04/15 16:19:40 nadya Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from WebServices.VisionInterface.WSNodes import wslib
# # $Header: /opt/cvs/python/packages/share1.5/AutoDockTools/CADD/VisionNetworks/VS_net.py,v 1.1 2010/11/06 00:59:32 sanner Exp $ # # $Id: VS_net.py,v 1.1 2010/11/06 00:59:32 sanner Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from WebServices.VisionInterface.WSNodes import wslib
# # $Header: /opt/cvs/CADD/workflows/MDanalysis/TrajQRClustering_0.1_net.py,v 1.1.2.1 2011/07/21 01:44:07 jren Exp $ # # $Id: TrajQRClustering_0.1_net.py,v 1.1.2.1 2011/07/21 01:44:07 jren Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from WebServices.VisionInterface.WSNodes import wslib
# # $Header: /opt/cvs/CADD/workflows/docking/AutoGrid_0.1_net.py,v 1.1 2011/04/15 16:16:48 nadya Exp $ # # $Id: AutoGrid_0.1_net.py,v 1.1 2011/04/15 16:16:48 nadya Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from WebServices.VisionInterface.WSNodes import wslib
# # $Header: /opt/cvs/python/packages/share1.5/Vision/doc/Examples/matplotlib/ImageFigure_net.py,v 1.7 2009/09/04 17:38:01 vareille Exp $ # # $Id: ImageFigure_net.py,v 1.7 2009/09/04 17:38:01 vareille Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from Vision.matplotlibNodes import matplotliblib from Vision.StandardNodes import stdlib
# # $Header: /opt/cvs/CADD/workflows/MDanalysis/GROMOSClustering_0.1_net.py,v 1.1 2011/04/15 16:03:51 nadya Exp $ # # $Id: GROMOSClustering_0.1_net.py,v 1.1 2011/04/15 16:03:51 nadya Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from Vision.StandardNodes import stdlib
######################################################################### # # $Header: /opt/cvs/CADD/workflows/docking/AutoDockSL_0.1_net.py,v 1.1 2011/04/15 16:16:48 nadya Exp $ # # $Id: AutoDockSL_0.1_net.py,v 1.1 2011/04/15 16:16:48 nadya Exp $ # if __name__ == '__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-" + str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from Vision.StandardNodes import stdlib from WebServices.VisionInterface.WSNodes import wslib
# # $Header: /opt/cvs/CADD/workflows/virtualScreening/AutoDockML_0.1_net.py,v 1.1 2011/04/15 16:19:38 nadya Exp $ # # $Id: AutoDockML_0.1_net.py,v 1.1 2011/04/15 16:19:38 nadya Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from WebServices.VisionInterface.WSNodes import wslib
######################################################################### # # $Header: /opt/cvs/python/packages/share1.5/Vision/doc/Examples/matplotlib/ImageFigure_net.py,v 1.7 2009/09/04 17:38:01 vareille Exp $ # # $Id: ImageFigure_net.py,v 1.7 2009/09/04 17:38:01 vareille Exp $ # if __name__ == '__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-" + str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from Vision.matplotlibNodes import matplotliblib from Vision.StandardNodes import stdlib
# # $Header: /opt/cvs/CADD/workflows/visualization/VSResults_0.1_pmvnet.py,v 1.1 2011/04/15 16:21:41 nadya Exp $ # # $Id: VSResults_0.1_pmvnet.py,v 1.1 2011/04/15 16:21:41 nadya Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from Pmv.VisionInterface.PmvNodes import pmvlib from Vision.StandardNodes import stdlib
# # $Header: /opt/cvs/CADD/workflows/docking/PrepareReceptor_0.1_net.py,v 1.1 2011/04/15 16:16:49 nadya Exp $ # # $Id: PrepareReceptor_0.1_net.py,v 1.1 2011/04/15 16:16:49 nadya Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from WebServices.VisionInterface.WSNodes import wslib
######################################################################### # # $Header: /opt/cvs/CADD/workflows/virtualScreening/VinaVSlocal_0.1_net.py,v 1.1 2011/04/15 16:19:40 nadya Exp $ # # $Id: VinaVSlocal_0.1_net.py,v 1.1 2011/04/15 16:19:40 nadya Exp $ # if __name__ == '__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-" + str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from WebServices.VisionInterface.WSNodes import wslib
# # $Header: /opt/cvs/CADD/workflows/virtualScreening/AutoDockVSlocal_0.1_net.py,v 1.1 2011/04/15 16:19:38 nadya Exp $ # # $Id: AutoDockVSlocal_0.1_net.py,v 1.1 2011/04/15 16:19:38 nadya Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from WebServices.VisionInterface.WSNodes import wslib
######################################################################### # # $Header: /opt/cvs/CADD/workflows/docking/PrepareReceptor_0.1_net.py,v 1.1 2011/04/15 16:16:49 nadya Exp $ # # $Id: PrepareReceptor_0.1_net.py,v 1.1 2011/04/15 16:16:49 nadya Exp $ # if __name__ == '__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-" + str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from WebServices.VisionInterface.WSNodes import wslib
# # $Header: /opt/cvs/CADD/workflows/visualization/visualization_0.1.1_pmvnet.py,v 1.1.2.2 2011/08/04 22:57:55 jren Exp $ # # $Id: visualization_0.1.1_pmvnet.py,v 1.1.2.2 2011/08/04 22:57:55 jren Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from Pmv.VisionInterface.PmvNodes import pmvlib from Vision.StandardNodes import stdlib
######################################################################### # # $Header: /opt/cvs/CADD/workflows/virtualScreening/VinaVSpublic_0.1_net.py,v 1.1 2011/04/15 16:19:41 nadya Exp $ # # $Id: VinaVSpublic_0.1_net.py,v 1.1 2011/04/15 16:19:41 nadya Exp $ # if __name__ == '__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-" + str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from WebServices.VisionInterface.WSNodes import wslib
# # $Header: /opt/cvs/CADD/workflows/MDanalysis/NAMDTeragrid_0.1_net.py,v 1.1 2011/04/15 16:03:52 nadya Exp $ # # $Id: NAMDTeragrid_0.1_net.py,v 1.1 2011/04/15 16:03:52 nadya Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from WebServices.VisionInterface.WSNodes import wslib from Vision.StandardNodes import stdlib
# # $Header: /opt/cvs/CADD/workflows/MDanalysis/AMDNBCR_0.2_net.py,v 1.1.2.1 2011/06/29 01:27:43 jren Exp $ # # $Id: AMDNBCR_0.2_net.py,v 1.1.2.1 2011/06/29 01:27:43 jren Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from WebServices.VisionInterface.WSNodes import wslib from Vision.StandardNodes import stdlib
# # $Header: /opt/cvs/python/packages/share1.5/Vision/doc/Examples/matplotlib/Axes_net.py,v 1.4 2009/07/31 20:51:41 vareille Exp $ # # $Id: Axes_net.py,v 1.4 2009/07/31 20:51:41 vareille Exp $ # if __name__=='__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-"+str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from Vision.matplotlibNodes import matplotliblib from Vision.StandardNodes import stdlib
######################################################################### # # $Header: /opt/cvs/CADD/workflows/MDanalysis/NAMDTeragrid_0.1_net.py,v 1.1 2011/04/15 16:03:52 nadya Exp $ # # $Id: NAMDTeragrid_0.1_net.py,v 1.1 2011/04/15 16:03:52 nadya Exp $ # if __name__ == '__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-" + str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from WebServices.VisionInterface.WSNodes import wslib from Vision.StandardNodes import stdlib
######################################################################### # # $Header: /opt/cvs/python/packages/share1.5/AutoDockTools/CADD/VisionNetworks/VS_net.py,v 1.1 2010/11/06 00:59:32 sanner Exp $ # # $Id: VS_net.py,v 1.1 2010/11/06 00:59:32 sanner Exp $ # if __name__ == '__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-" + str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from WebServices.VisionInterface.WSNodes import wslib
######################################################################### # # $Header: /opt/cvs/CADD/workflows/docking/AutoGrid_0.1_net.py,v 1.1 2011/04/15 16:16:48 nadya Exp $ # # $Id: AutoGrid_0.1_net.py,v 1.1 2011/04/15 16:16:48 nadya Exp $ # if __name__ == '__main__': from sys import argv if '--help' in argv or '-h' in argv or '-w' in argv: # run without Vision withoutVision = True from Vision.VPE import NoGuiExec ed = NoGuiExec() from NetworkEditor.net import Network import os masterNet = Network("process-" + str(os.getpid())) ed.addNetwork(masterNet) else: # run as a stand alone application while vision is hidden withoutVision = False from Vision import launchVisionToRunNetworkAsApplication, mainLoopVisionToRunNetworkAsApplication if '-noSplash' in argv: splash = False else: splash = True masterNet = launchVisionToRunNetworkAsApplication(splash=splash) import os masterNet.filename = os.path.abspath(__file__) from traceback import print_exc ## loading libraries ## from AutoDockTools.VisionInterface.Adt import Adt from WebServices.VisionInterface.WSNodes import wslib