def export_experiment(self):
self.info_logfile_dict['roi'].append(self.roi_list)
self.info_logfile_dict['exposure time'].append(self.exposure_time_value.value())
self.info_logfile_dict['binning'].append(self.bin_size)
self.info_logfile_dict['fps'].append(self.internal_frame_rate)
self.info_logfile_dict['fov'].append((self.x_init, self.x_dim, self.y_init, self.y_dim))
jsonFunctions.write_to_json(self.info_logfile_dict, self.info_logfile_path)
def set_main_path_from_user_input(self):
"""
Set the path_init variable from user input and save it in the path_init
config file
"""
self.path_init = QFileDialog.getExistingDirectory(None,
'Select the folder you want the path to change to:',
'C:/', QFileDialog.ShowDirsOnly)
jsonFunctions.write_to_json(self.path_init, 'OPTIMAQS/config_files/path_init.json')
def change_folder(self):
"""
Change the folder defined as self.path
"""
self.path = QFileDialog.getExistingDirectory(None, 'Select the folder you want the path to change to:',
'C:/', QFileDialog.ShowDirsOnly)
self.path = self.path.replace('/','\\')
self.path_raw_data = self.path + '\\raw_data'
self.current_folder_label_2.setText(str(self.path))
jsonFunctions.write_to_json(self.path, 'OPTIMAQS/config_files/last_experiment.json')
def initialize_experiment(self):
"""
Initialize/Reinitilize experiment logfiles and variables
"""
## reinitilize JSON files
self.init_log_dict()
self.images = []
self.image_list = []
self.image_reshaped = []
self.ephy_data = []
## init perf_counter for timing events
self.perf_counter_init = time.perf_counter()
jsonFunctions.write_to_json(
self.perf_counter_init, 'OPTIMAQS/config_files/perf_counter_init.json')
## generate folder to save the data
self.path = self.path_init
self.path_raw_data = self.path + '\\raw_data'
date = time.strftime("%Y_%m_%d")
self.path = os.path.join(self.path, date)
if not os.path.exists(self.path):
os.makedirs(
self.path
) ## make a folder with the date of today if it does not already exists
n = 1
self.path_temp = os.path.join(
self.path, 'experiment_' + str(n)
) ## in case of multiple experiments a day, need to create several subdirectory
while os.path.exists(
self.path_temp): ## but necesarry to check which one aleady exists
n += 1
self.path_temp = os.path.join(self.path, 'experiment_' + str(n))
self.path = self.path_temp
self.path_raw_data = self.path + '\\raw_data'
os.makedirs(self.path)
os.makedirs(self.path + '\\dlp_images')
os.makedirs(self.path + '\\raw_data')
jsonFunctions.write_to_json(self.path,
'OPTIMAQS/config_files/last_experiment.json')
## generate log files
self.info_logfile_path = self.path + "/experiment_{}_info.json".format(n)
experiment_time = time.asctime(time.localtime(time.time()))
self.info_logfile_dict['experiment creation date'] = experiment_time
# with open(self.info_logfile_path,"w+") as file: ## store basic info and comments
# json.dump(self.info_logfile_dict, file)
jsonFunctions.write_to_json(self.info_logfile_dict, self.info_logfile_path)
self.timings_logfile_path = self.path + "/experiment_{}_timings.json".format(
n)
# with open(self.timings_logfile_path, "w+") as file:
# json.dump(self.timings_logfile_dict, file)
jsonFunctions.write_to_json(self.timings_logfile_dict,
self.timings_logfile_path)
self.current_folder_label_2.setText(str(
self.path)) ## show current directory in the GUI
def saving_images(self, images, times):
if self.saving_check.isChecked():
## saving images
save_images_worker = Worker(self.save, self.image_list,
self.path_raw_data)
save_images_worker.signals.result.connect(
save_images_worker.print_output)
save_images_worker.signals.finished.connect(
save_images_worker.thread_complete)
#save_images_worker.signals.progress.connect(self.progress_fn)
self.threadpool.start(save_images_worker)
## saving images times
jsonFunctions.update_timings_to_json(self.timings_logfile_dict,
self.timings_logfile_path)
## saving experiment info
#self.info_logfile_dict['roi'].append(self.roi_list) ##this is doe in export roi
self.info_logfile_dict['exposure time'].append(
self.exposure_time_value.value())
self.info_logfile_dict['binning'].append(self.bin_size)
self.info_logfile_dict['fps'].append(self.internal_frame_rate)
self.info_logfile_dict['fov'].append(
(self.x_init, self.x_dim, self.y_init, self.y_dim))
jsonFunctions.write_to_json(self.info_logfile_dict,
self.info_logfile_path)
def save_main_path_to_config_file(self):
"""
Save the path_init variable in the path_init config file
"""
return jsonFunctions.write_to_json(self.path_init, 'OPTIMAQS/config_files/path_init.json')
def export_roi(self):
self.info_logfile_dict['roi'].append(self.roi_list)
jsonFunctions.write_to_json(self.info_logfile_dict,
self.info_logfile_path)
print('roi exported')