def _createNewTabs(self):
logger.debug('Creating tabs')
self.adding_panes = True
self.mdp = MetadataTree.MetadataPanel(self, self.pipeline.mdh, editable=False)
self.AddPage(self.mdp, caption='Metadata', select=False, update=False)
#print 'cp'
if 'gFrac' in self.pipeline.filter.keys():
self.colp = colourPanel.colourPanel(self, self.pipeline, self)
self.AddPage(self.colp, caption='Colour', select=False, update=False)
#print 'ev'
if not self.pipeline.events is None:
#self.elv = eventLogViewer.eventLogPanel(self, self.pipeline.events,
# self.pipeline.mdh,
# [0, self.pipeline.selectedDataSource['tIndex'].max()])
st = min(self.pipeline.events['Time'].min() - self.pipeline.mdh['StartTime'], 0)
et = 1.1*self.pipeline.selectedDataSource['tIndex'].max()*self.pipeline.mdh['Camera.CycleTime']
print(st, et)
self.elv = eventLogViewer.eventLogTPanel(self, self.pipeline.events,self.pipeline.mdh,[st, et])
self.elv.SetCharts(self.pipeline.eventCharts)
self.AddPage(self.elv, caption='Events', select=False, update=False)
self.elv.activate() #turn painting on now to avoid a paint when we create
logger.debug('Finished creating tabs')
self.adding_panes = False
self._mgr.Update()
def Plug(dsviewer):
image = dsviewer.image
if 'events' in dir(image) and len(image.events) > 0:
st = min(image.events['Time'].min() - image.mdh['StartTime'], 0)
stt = image.mdh.getEntry('StartTime')
if 'EndTime' in image.mdh.getEntryNames():
et = image.mdh.getEntry('EndTime')
else:
et = piecewiseMapping.frames_to_times(image.data.getNumSlices(),
image.events, image.mdh)
dsviewer.elv = eventLogViewer.eventLogTPanel(dsviewer,
image.events,
image.mdh, [st, et - stt],
activate=True)
dsviewer.AddPage(dsviewer.elv, False, 'Events')
charts = []
if b'ProtocolFocus' in dsviewer.elv.evKeyNames:
dsviewer.zm = piecewiseMapping.GeneratePMFromEventList(
dsviewer.elv.eventSource, image.mdh,
image.mdh.getEntry('StartTime'),
image.mdh.getEntry('Protocol.PiezoStartPos'))
charts.append(('Focus [um]', dsviewer.zm, b'ProtocolFocus'))
if b'ScannerXPos' in dsviewer.elv.evKeyNames:
x0 = 0
if 'Positioning.Stage_X' in image.mdh.getEntryNames():
x0 = image.mdh.getEntry('Positioning.Stage_X')
dsviewer.xm = piecewiseMapping.GeneratePMFromEventList(
dsviewer.elv.eventSource, image.mdh,
image.mdh.getEntry('StartTime'), x0, b'ScannerXPos', 0)
charts.append(('XPos [um]', dsviewer.xm, b'ScannerXPos'))
if b'ScannerYPos' in dsviewer.elv.evKeyNames:
y0 = 0
if 'Positioning.Stage_Y' in image.mdh.getEntryNames():
y0 = image.mdh.getEntry('Positioning.Stage_Y')
dsviewer.ym = piecewiseMapping.GeneratePMFromEventList(
dsviewer.elv.eventSource, image.mdh,
image.mdh.getEntry('StartTime'), y0, b'ScannerYPos', 0)
charts.append(('YPos [um]', dsviewer.ym, b'ScannerYPos'))
if b'ScannerZPos' in dsviewer.elv.evKeyNames:
z0 = 0
if 'Positioning.PIFoc' in image.mdh.getEntryNames():
z0 = image.mdh.getEntry('Positioning.PIFoc')
dsviewer.zm = piecewiseMapping.GeneratePMFromEventList(
dsviewer.elv.eventSource, image.mdh,
image.mdh.getEntry('StartTime'), z0, b'ScannerZPos', 0)
charts.append(('ZPos [um]', dsviewer.zm, b'ScannerZPos'))
dsviewer.elv.SetCharts(charts)
dsviewer.updateHooks.append(Update)
def Plug(dsviewer):
image = dsviewer.image
if "events" in dir(image) and len(image.events) > 0:
st = image.mdh.getEntry("StartTime")
if "EndTime" in image.mdh.getEntryNames():
et = image.mdh.getEntry("EndTime")
else:
et = piecewiseMapping.framesToTime(image.data.getNumSlices(), image.events, image.mdh)
dsviewer.elv = eventLogViewer.eventLogTPanel(dsviewer, image.events, image.mdh, [0, et - st])
dsviewer.AddPage(dsviewer.elv, False, "Events")
charts = []
if "ProtocolFocus" in dsviewer.elv.evKeyNames:
dsviewer.zm = piecewiseMapping.GeneratePMFromEventList(
dsviewer.elv.eventSource,
image.mdh,
image.mdh.getEntry("StartTime"),
image.mdh.getEntry("Protocol.PiezoStartPos"),
)
charts.append(("Focus [um]", dsviewer.zm, "ProtocolFocus"))
if "ScannerXPos" in dsviewer.elv.evKeyNames:
x0 = 0
if "Positioning.Stage_X" in image.mdh.getEntryNames():
x0 = image.mdh.getEntry("Positioning.Stage_X")
dsviewer.xm = piecewiseMapping.GeneratePMFromEventList(
dsviewer.elv.eventSource, image.mdh, image.mdh.getEntry("StartTime"), x0, "ScannerXPos", 0
)
charts.append(("XPos [um]", dsviewer.xm, "ScannerXPos"))
if "ScannerYPos" in dsviewer.elv.evKeyNames:
y0 = 0
if "Positioning.Stage_Y" in image.mdh.getEntryNames():
y0 = image.mdh.getEntry("Positioning.Stage_Y")
dsviewer.ym = piecewiseMapping.GeneratePMFromEventList(
dsviewer.elv.eventSource, image.mdh, image.mdh.getEntry("StartTime"), y0, "ScannerYPos", 0
)
charts.append(("YPos [um]", dsviewer.ym, "ScannerYPos"))
if "ScannerZPos" in dsviewer.elv.evKeyNames:
z0 = 0
if "Positioning.PIFoc" in image.mdh.getEntryNames():
z0 = image.mdh.getEntry("Positioning.PIFoc")
dsviewer.zm = piecewiseMapping.GeneratePMFromEventList(
dsviewer.elv.eventSource, image.mdh, image.mdh.getEntry("StartTime"), z0, "ScannerZPos", 0
)
charts.append(("ZPos [um]", dsviewer.zm, "ScannerZPos"))
dsviewer.elv.SetCharts(charts)
dsviewer.updateHooks.append(Update)