def load_part(cls, file_path):
data = cls.load_metadata(file_path)
bad_key = []
if isinstance(data, MutableMapping) and not check_loaded_dict(data):
for k, v in data.items():
if not check_loaded_dict(v):
bad_key.append(k)
for el in bad_key:
del data[el]
elif isinstance(data, ProfileDict) and not data.verify_data():
bad_key = data.filter_data()
return data, bad_key
def test_profile_execute(self, data_test_dir):
profile_path = os.path.join(data_test_dir, "segment_profile_test.json")
# noinspection PyBroadException
try:
data = UpdateLoadedMetadataAnalysis.load_json_data(profile_path)
assert check_loaded_dict(data)
except Exception: # pylint: disable=W0703
pytest.fail("Fail in loading profile")
return
image = TiffImageReader.read_image(
os.path.join(data_test_dir, "stack1_components",
"stack1_component5.tif"),
os.path.join(data_test_dir, "stack1_components",
"stack1_component5_mask.tif"),
)
val: ROIExtractionProfile
for val in data.values():
algorithm: ROIExtractionAlgorithm = analysis_algorithm_dict[
val.algorithm]()
algorithm.set_image(image)
algorithm.set_mask(image.mask.squeeze())
algorithm.set_parameters(**val.values)
result = algorithm.calculation_run(empty)
assert np.max(result.roi) == 2
def test_profile_load(self, data_test_dir):
profile_path = os.path.join(data_test_dir, "segment_profile_test.json")
# noinspection PyBroadException
try:
with open(profile_path, "r") as ff:
data = json.load(ff, object_hook=part_hook)
assert check_loaded_dict(data)
except Exception:
pytest.fail("Fail in loading profile")
def test_measure_load(self, data_test_dir):
profile_path = os.path.join(data_test_dir, "measurements_profile_test.json")
# noinspection PyBroadException
try:
with open(profile_path) as ff:
data = json.load(ff, object_hook=part_hook)
assert check_loaded_dict(data)
except Exception: # pylint: disable=W0703
pytest.fail("Fail in loading profile")
def test_json_load(self):
class Test(Enum):
test0 = 0
test1 = 1
test2 = 2
test_json = json.dumps(Test.test0, cls=PartEncoder)
assert not check_loaded_dict(json.loads(test_json, object_hook=part_hook))
enum_register.register_class(Test)
assert isinstance(json.loads(test_json, object_hook=part_hook), Test)