def test_Sloppy_derived_parameters():
sloppyModelEg = {
'assignments': {},
'derived_params': {'k': 's1/s2', 'q': 's3*s4', 'm': 'q+s5'},
'functions': {},
'odes': {'x':'y + _y_RHS', 'y': '-k*x/m'},
'parameters':{'s1': 1, 's2': 10., 's3': 0.25, 's4': 1, 's5': 0.25},
'events': {},
'domains': {}
}
model_name = 'test_derived_parameters'
ics = {'x': 1, 'y': 0.4}
algparams = {'init_step': 0.1, 'stiff': True}
sModel = makeSloppyModel(model_name, sloppyModelEg, 'Vode_ODEsystem',
algParams=algparams, silent=False,
containsRHSdefs=True)
sModel.compute(trajname='test_derived_params',
force=True,
ics=ics,
tdata=[0, 20],
verboselevel=0
)
pts = sModel.sample('test_derived_params')
assert_allclose(pts[-1]['x'], -0.042398, rtol=1e-4)
assert_allclose(pts[-1]['y'], -0.073427, rtol=1e-4)
def test_Sloppy_derived_parameters():
sloppyModelEg = {
'assignments': {},
'derived_params': {
'k': 's1/s2',
'q': 's3*s4',
'm': 'q+s5'
},
'functions': {},
'odes': {
'x': 'y + _y_RHS',
'y': '-k*x/m'
},
'parameters': {
's1': 1,
's2': 10.,
's3': 0.25,
's4': 1,
's5': 0.25
},
'events': {},
'domains': {}
}
model_name = 'test_derived_parameters'
ics = {'x': 1, 'y': 0.4}
algparams = {'init_step': 0.1, 'stiff': True}
sModel = makeSloppyModel(model_name,
sloppyModelEg,
'Vode_ODEsystem',
algParams=algparams,
silent=False,
containsRHSdefs=True)
sModel.compute(trajname='test_derived_params',
force=True,
ics=ics,
tdata=[0, 20],
verboselevel=0)
pts = sModel.sample('test_derived_params')
assert_allclose(pts[-1]['x'], -0.042398, rtol=1e-4)
assert_allclose(pts[-1]['y'], -0.073427, rtol=1e-4)
