def __init__(self, parent=None, options=None):
qt.QWidget.__init__(self, parent)
self.mainLayout = qt.QGridLayout(self)
self.mainLayout.setMargin(0)
self.mainLayout.setSpacing(2)
self.buttonGroup = qt.QButtonGroup(self)
self.buttonList = []
i = 0
if options is None:
optionList = ['SCAN', 'MCA']
else:
optionList = options
actionList = ['ADD', 'REMOVE', 'REPLACE']
for option in optionList:
row = optionList.index(option)
for action in actionList:
col = actionList.index(action)
button = qt.QPushButton(self)
button.setText(action + " " + option)
self.mainLayout.addWidget(button, row, col)
self.buttonGroup.addButton(button)
self.buttonList.append(button)
self.connect(self.buttonGroup,
qt.SIGNAL('buttonClicked(QAbstractButton *)'),
self.emitSignal)
def __init__(self, parent=None, name=None, fl=0, keys=(), params=()):
if QTVERSION < '4.0.0':
qt.QWidget.__init__(self, parent, name, fl)
if name == None:
self.setName("RadioField")
#self.resize(166,607)
self.setSizePolicy(
qt.QSizePolicy(1, 1, 0, 0,
self.sizePolicy().hasHeightForWidth()))
self.setCaption(str("RadioField"))
RadioFieldLayout = qt.QHBoxLayout(self, 11, 6, "RadioFieldLayout")
else:
qt.QWidget.__init__(self, parent)
RadioFieldLayout = qt.QHBoxLayout(self)
RadioFieldLayout.setMargin(11)
RadioFieldLayout.setSpacing(6)
self.RadioFieldBox = qt.QButtonGroup(self)
if QTVERSION < '4.0.0':
self.RadioFieldBox.setSizePolicy(
qt.QSizePolicy(
1, 1, 0, 0,
self.RadioFieldBox.sizePolicy().hasHeightForWidth()))
self.RadioFieldBox.setTitle(str(""))
self.RadioFieldBox.setColumnLayout(0, qt.Qt.Vertical)
self.RadioFieldBox.layout().setSpacing(6)
self.RadioFieldBox.layout().setMargin(11)
RadioFieldBoxLayout = qt.QVBoxLayout(self.RadioFieldBox.layout())
RadioFieldBoxLayout.setAlignment(qt.Qt.AlignTop)
Layout1 = qt.QVBoxLayout(None, 0, 6, "Layout1")
self.dict = {}
if type(keys) == TupleType:
for key in keys:
self.dict[key] = 1
else:
self.dict[keys] = 1
self.RadioButton = []
i = 0
for text in params:
self.RadioButton.append(
qt.QRadioButton(self.RadioFieldBox, "RadioButton" + "%d" % i))
self.RadioButton[-1].setSizePolicy(
qt.QSizePolicy(
1, 1, 0, 0,
self.RadioButton[-1].sizePolicy().hasHeightForWidth()))
self.RadioButton[-1].setText(str(text))
Layout1.addWidget(self.RadioButton[-1])
i = i + 1
RadioFieldBoxLayout.addLayout(Layout1)
RadioFieldLayout.addWidget(self.RadioFieldBox)
self.RadioButton[0].setChecked(1)
self.connect(self.RadioFieldBox, qt.SIGNAL("clicked(int)"),
self.setvalue)
def __init__(self, parent=None):
qt.QWidget.__init__(self, parent)
self.mainLayout = qt.QHBoxLayout(self)
#self.mainLayout.setMargin(0)
#self.mainLayout.setSpacing(0)
self.buttonGroup = qt.QButtonGroup(self)
i = 0
for text in [
"1D data is first dimension", "1D data is last dimension"
]:
rButton = qt.QRadioButton(self)
rButton.setText(text)
self.mainLayout.addWidget(rButton)
self.buttonGroup.addButton(rButton, i)
i += 1
rButton.setChecked(True)
self._stackIndex = -1
self.connect(self.buttonGroup,
qt.SIGNAL('buttonPressed(QAbstractButton *)'), self._slot)
def configureFilter(self):
msg = qt.QDialog()
msgLayout = qt.QGridLayout()
buttonLayout = qt.QHBoxLayout()
inpThreshold = qt.QDoubleSpinBox()
inpThreshold.setRange(0., 10.)
inpThreshold.setSingleStep(.1)
inpThreshold.setValue(2.0)
inpThreshold.setToolTip('Increase width for broad spikes')
inpWidth = qt.QSpinBox()
inpWidth.setRange(1, 101)
inpWidth.setSingleStep(2)
inpWidth.setValue(self.width)
inpWidth.setToolTip(
'Set low threshold for multiple spikes of different markedness')
labelWidth = qt.QLabel('Width (must be odd)')
labelThreshold = qt.QLabel('Threshold (multiple of deviation)')
buttonOK = qt.QPushButton('Ok')
buttonOK.clicked.connect(msg.accept)
buttonCancel = qt.QPushButton('Cancel')
buttonCancel.clicked.connect(msg.reject)
allActiveBG = qt.QButtonGroup()
buttonAll = qt.QCheckBox('Apply to All')
buttonActive = qt.QCheckBox('Apply to Active')
allActiveBG.addButton(buttonAll, 0)
allActiveBG.addButton(buttonActive, 1)
buttonLayout.addWidget(qt.HorizontalSpacer())
buttonLayout.addWidget(buttonOK)
buttonLayout.addWidget(buttonCancel)
msgLayout.addWidget(labelWidth, 0, 0)
msgLayout.addWidget(inpWidth, 0, 1)
msgLayout.addWidget(labelThreshold, 1, 0)
msgLayout.addWidget(inpThreshold, 1, 1)
msgLayout.addWidget(buttonActive, 2, 0)
msgLayout.addWidget(buttonAll, 2, 1)
msgLayout.addLayout(buttonLayout, 3, 0, 1, 2)
msg.setLayout(msgLayout)
if msg.exec_():
try:
self.threshold = float(inpThreshold.value()) / 100.
self.threshold = float(inpThreshold.value())
self.width = int(inpWidth.value())
except:
self.threshold = 0.66
self.width = 9
if not (self.width % 2):
self.width += 1
if buttonActive.isChecked():
if DEBUG:
print('ActiveChecked')
self.removeSpikesActive()
if buttonAll.isChecked():
if DEBUG:
print('AllChecked')
self.removeSpikesAll()
def __init__(self, parent=None):
qt.QWidget.__init__(self, parent)
self.mainLayout = qt.QGridLayout(self)
self.mainLayout.setContentsMargins(0, 0, 0, 0)
self.mainLayout.setSpacing(2)
self.__parametersDict = self._getDefaultParameters()
self.__defaultEdgeEnergy = None
self._polynomOptions = [
'Modif. Victoreen', 'Victoreen', 'Constant', 'Linear', 'Parabolic',
'Cubic'
]
i = 0
edgeGroupBox = qt.QGroupBox(self)
edgeGroupBoxLayout = qt.QGridLayout(edgeGroupBox)
edgeGroupBox.setAlignment(qt.Qt.AlignHCenter)
edgeGroupBox.setTitle('Edge Position')
autoButton = qt.QRadioButton(edgeGroupBox)
autoButton.setText('Auto')
autoButton.setChecked(True)
userButton = qt.QRadioButton(edgeGroupBox)
userButton.setText('User')
buttonGroup = qt.QButtonGroup(edgeGroupBox)
buttonGroup.addButton(autoButton, 0)
buttonGroup.addButton(userButton, 1)
buttonGroup.setExclusive(True)
userEnergy = qt.QLineEdit(edgeGroupBox)
userEnergy.setEnabled(False)
validator = qt.QDoubleValidator(userEnergy)
userEnergy.setValidator(validator)
edgeGroupBoxLayout.addWidget(autoButton, 0, 0)
edgeGroupBoxLayout.addWidget(userButton, 1, 0)
edgeGroupBoxLayout.addWidget(userEnergy, 1, 1)
self.mainLayout.addWidget(edgeGroupBox, 0, 0, 2, 2)
#create handles to the relevant widgets
self.autoEdgeButton = autoButton
self.userEdgeButton = userButton
self.userEdgeEnergy = userEnergy
# connect the signals
self.connect(buttonGroup, qt.SIGNAL('buttonClicked(int)'),
self._buttonClicked)
self.connect(self.userEdgeEnergy, qt.SIGNAL('editingFinished()'),
self._userEdgeEnergyEditingFinished)
regionsGroupBox = qt.QGroupBox(self)
regionsGroupBoxLayout = qt.QGridLayout(regionsGroupBox)
regionsGroupBox.setAlignment(qt.Qt.AlignHCenter)
regionsGroupBox.setTitle('Regions')
i = 1
for text in ["Pre-edge Polynom:", "Post-edge Polynom:"]:
label = qt.QLabel(regionsGroupBox)
label.setText(text)
regionsGroupBoxLayout.addWidget(label, i, 0)
#self.mainLayout.addWidget(qt.HorizontalSpacer(self), i, 1)
i += 1
i = 1
self.widgetDict = {}
for key in ['pre_edge', 'post_edge']:
self.widgetDict[key] = {}
c = 1
w = PolynomSelector(regionsGroupBox, options=self._polynomOptions)
self.connect(w, qt.SIGNAL('activated(int)'),
self._regionParameterChanged)
regionsGroupBoxLayout.addWidget(w, i, c)
c += 1
self.widgetDict[key]['polynomial'] = w
for text in ['delta xmin', 'delta xmax']:
label = qt.QLabel(regionsGroupBox)
label.setText(text)
self.widgetDict[key][text] = qt.QLineEdit(regionsGroupBox)
self.connect(self.widgetDict[key][text],
qt.SIGNAL('editingFinished()'),
self._regionParameterChanged)
validator = qt.QDoubleValidator(self.widgetDict[key][text])
self.widgetDict[key][text].setValidator(validator)
regionsGroupBoxLayout.addWidget(label, i, c)
regionsGroupBoxLayout.addWidget(self.widgetDict[key][text], i,
c + 1)
c += 2
i += 1
self.mainLayout.addWidget(regionsGroupBox, 0, 2)
self._updateParameters()
def __init__(self, parent=None, options=[1, 2, 3, 4, 5, 10]):
qt.QDialog.__init__(self, parent)
if QTVERSION < '4.0.0':
self.setCaption("NNMA Configuration Dialog")
else:
self.setWindowTitle("NNMA Configuration Dialog")
self.mainLayout = qt.QVBoxLayout(self)
self.mainLayout.setMargin(11)
self.mainLayout.setSpacing(0)
self.infoButton = qt.QPushButton(self)
self.infoButton.setAutoDefault(False)
self.infoButton.setText('About NNMA')
self.mainLayout.addWidget(self.infoButton)
self.connect(self.infoButton, qt.SIGNAL('clicked()'), self._showInfo)
#
self.methodOptions = qt.QGroupBox(self)
self.methodOptions.setTitle('NNMA Method to use')
self.methods = [
'RRI', 'NNSC', 'NMF', 'SNMF', 'NMFKL', 'FNMAI', 'ALS', 'FastHALS',
'GDCLS'
]
self.methodOptions.mainLayout = qt.QGridLayout(self.methodOptions)
self.methodOptions.mainLayout.setMargin(0)
self.methodOptions.mainLayout.setSpacing(2)
self.buttonGroup = qt.QButtonGroup(self.methodOptions)
i = 0
for item in self.methods:
rButton = qt.QRadioButton(self.methodOptions)
self.methodOptions.mainLayout.addWidget(rButton, 0, i)
#self.l.setAlignment(rButton, qt.Qt.AlignHCenter)
if i == 1:
rButton.setChecked(True)
rButton.setText(item)
self.buttonGroup.addButton(rButton)
self.buttonGroup.setId(rButton, i)
i += 1
self.connect(self.buttonGroup,
qt.SIGNAL('buttonPressed(QAbstractButton *)'), self._slot)
self.mainLayout.addWidget(self.methodOptions)
# NNMA configuration parameters
self.nnmaConfiguration = qt.QGroupBox(self)
self.nnmaConfiguration.setTitle('NNMA Configuration')
self.nnmaConfiguration.mainLayout = qt.QGridLayout(
self.nnmaConfiguration)
self.nnmaConfiguration.mainLayout.setMargin(0)
self.nnmaConfiguration.mainLayout.setSpacing(2)
label = qt.QLabel(self.nnmaConfiguration)
label.setText('Tolerance (0<eps<1000:')
self._tolerance = qt.QLineEdit(self.nnmaConfiguration)
validator = qt.QDoubleValidator(self._tolerance)
self._tolerance.setValidator(validator)
self._tolerance._validator = validator
self._tolerance.setText("0.001")
self.nnmaConfiguration.mainLayout.addWidget(label, 0, 0)
self.nnmaConfiguration.mainLayout.addWidget(self._tolerance, 0, 1)
label = qt.QLabel(self.nnmaConfiguration)
label.setText('Maximum iterations:')
self._maxIterations = qt.QSpinBox(self.nnmaConfiguration)
self._maxIterations.setMinimum(1)
self._maxIterations.setMaximum(1000)
self._maxIterations.setValue(100)
self.nnmaConfiguration.mainLayout.addWidget(label, 1, 0)
self.nnmaConfiguration.mainLayout.addWidget(self._maxIterations, 1, 1)
self.mainLayout.addWidget(self.nnmaConfiguration)
#built in speed options
self.speedOptions = qt.QGroupBox(self)
self.speedOptions.setTitle("Speed Options")
self.speedOptions.mainLayout = qt.QGridLayout(self.speedOptions)
self.speedOptions.mainLayout.setMargin(0)
self.speedOptions.mainLayout.setSpacing(2)
labelPC = qt.QLabel(self)
labelPC.setText("Number of PC:")
self.nPC = qt.QSpinBox(self.speedOptions)
self.nPC.setMinimum(0)
self.nPC.setValue(10)
self.nPC.setMaximum(40)
self.binningLabel = qt.QLabel(self.speedOptions)
self.binningLabel.setText("Spectral Binning:")
self.binningCombo = qt.QComboBox(self.speedOptions)
for option in options:
self.binningCombo.addItem("%d" % option)
self.speedOptions.mainLayout.addWidget(labelPC, 0, 0)
self.speedOptions.mainLayout.addWidget(self.nPC, 0, 1)
#self.speedOptions.mainLayout.addWidget(qt.HorizontalSpacer(self), 0, 2)
self.speedOptions.mainLayout.addWidget(self.binningLabel, 1, 0)
self.speedOptions.mainLayout.addWidget(self.binningCombo, 1, 1)
self.binningCombo.setEnabled(True)
#the OK button
hbox = qt.QWidget(self)
hboxLayout = qt.QHBoxLayout(hbox)
hboxLayout.setMargin(0)
hboxLayout.setSpacing(0)
self.okButton = qt.QPushButton(hbox)
self.okButton.setAutoDefault(False)
self.okButton.setText("Accept")
hboxLayout.addWidget(qt.HorizontalSpacer(hbox))
hboxLayout.addWidget(self.okButton)
self.dismissButton = qt.QPushButton(hbox)
self.dismissButton.setAutoDefault(False)
self.dismissButton.setText("Dismiss")
hboxLayout.addWidget(qt.HorizontalSpacer(hbox))
hboxLayout.addWidget(self.dismissButton)
hboxLayout.addWidget(qt.HorizontalSpacer(hbox))
self.mainLayout.addWidget(self.speedOptions)
self.mainLayout.addWidget(hbox)
self.connect(self.okButton, qt.SIGNAL("clicked()"), self.accept)
self.connect(self.dismissButton, qt.SIGNAL("clicked()"), self.reject)
self._infoDocument = qt.QTextEdit()
self._infoDocument.setReadOnly(True)
self._infoDocument.setText(NNMAModule.__doc__)
self._infoDocument.hide()
self.mainLayout.addWidget(self._infoDocument)
def __init__(self,
parent=None,
options=[1, 2, 3, 4, 5, 10],
regions=False):
qt.QDialog.__init__(self, parent)
if QTVERSION < '4.0.0':
self.setCaption("PCA Configuration Dialog")
else:
self.setWindowTitle("PCA Configuration Dialog")
self.mainLayout = qt.QVBoxLayout(self)
self.mainLayout.setMargin(11)
self.mainLayout.setSpacing(0)
self.methodOptions = qt.QGroupBox(self)
self.methodOptions.setTitle('PCA Method to use')
self.methods = [
'Covariance', 'Expectation Max.', 'Cov. Multiple Arrays'
]
self.functions = [
PCAModule.numpyPCA, PCAModule.expectationMaximizationPCA,
PCAModule.multipleArrayPCA
]
self.methodOptions.mainLayout = qt.QGridLayout(self.methodOptions)
self.methodOptions.mainLayout.setMargin(0)
self.methodOptions.mainLayout.setSpacing(2)
#this does not seem to bring any advantage
if 0:
self.methods.append("Covariance Numpy")
self.functions.append(PCAModule.numpyPCA)
if MDP:
#self.methods.append("MDP (PCA + ICA)")
self.methods.append("MDP (SVD float32)")
self.methods.append("MDP (SVD float64)")
self.methods.append("MDP ICA (float32)")
self.methods.append("MDP ICA (float64)")
self.functions.append(PCAModule.mdpPCASVDFloat32)
self.functions.append(PCAModule.mdpPCASVDFloat64)
self.functions.append(PCAModule.mdpICAFloat32)
self.functions.append(PCAModule.mdpICAFloat64)
self.buttonGroup = qt.QButtonGroup(self.methodOptions)
i = 0
for item in self.methods:
rButton = qt.QRadioButton(self.methodOptions)
self.methodOptions.mainLayout.addWidget(rButton, 0, i)
#self.l.setAlignment(rButton, qt.Qt.AlignHCenter)
if i == 1:
rButton.setChecked(True)
rButton.setText(item)
self.buttonGroup.addButton(rButton)
self.buttonGroup.setId(rButton, i)
i += 1
self.connect(self.buttonGroup,
qt.SIGNAL('buttonPressed(QAbstractButton *)'), self._slot)
self.mainLayout.addWidget(self.methodOptions)
#built in speed options
self.speedOptions = qt.QGroupBox(self)
self.speedOptions.setTitle("Speed Options")
self.speedOptions.mainLayout = qt.QGridLayout(self.speedOptions)
self.speedOptions.mainLayout.setMargin(0)
self.speedOptions.mainLayout.setSpacing(2)
labelPC = qt.QLabel(self)
labelPC.setText("Number of PC:")
self.nPC = qt.QSpinBox(self.speedOptions)
self.nPC.setMinimum(0)
self.nPC.setValue(10)
self.nPC.setMaximum(40)
self.binningLabel = qt.QLabel(self.speedOptions)
self.binningLabel.setText("Spectral Binning:")
self.binningCombo = qt.QComboBox(self.speedOptions)
for option in options:
self.binningCombo.addItem("%d" % option)
self.speedOptions.mainLayout.addWidget(labelPC, 0, 0)
self.speedOptions.mainLayout.addWidget(self.nPC, 0, 1)
#self.speedOptions.mainLayout.addWidget(qt.HorizontalSpacer(self), 0, 2)
self.speedOptions.mainLayout.addWidget(self.binningLabel, 1, 0)
self.speedOptions.mainLayout.addWidget(self.binningCombo, 1, 1)
self.binningCombo.setEnabled(False)
self.connect(self.binningCombo, qt.SIGNAL("activated(int)"),
self._updatePlotFromBinningCombo)
if regions:
self.__regions = True
self.__addRegionsWidget()
else:
self.__regions = False
#the optional plot
self.scanWindow = None
#the OK button
hbox = qt.QWidget(self)
hboxLayout = qt.QHBoxLayout(hbox)
hboxLayout.setMargin(0)
hboxLayout.setSpacing(0)
self.okButton = qt.QPushButton(hbox)
self.okButton.setText("Accept")
self.okButton.setAutoDefault(False)
hboxLayout.addWidget(qt.HorizontalSpacer(hbox))
hboxLayout.addWidget(self.okButton)
hboxLayout.addWidget(qt.HorizontalSpacer(hbox))
self.mainLayout.addWidget(self.speedOptions)
if regions:
self.mainLayout.addWidget(self.regionsWidget)
self.mainLayout.addWidget(hbox)
if self.scanWindow is not None:
self.mainLayout.addWidget(self.scanWindow)
self.connect(self.okButton, qt.SIGNAL("clicked()"), self.accept)