def Pxx(xEdge, yEdge):
# no | node | e1 | e2
# 00 | i ,j | i ,j | i ,j
# 10 | i+1,j | i ,j | i+1,j
# 01 | i ,j+1 | i ,j+1 | i ,j
# 11 | i+1,j+1 | i ,j+1 | i+1,j
posX = 0 if xEdge == 'eX0' else 1
posY = 0 if yEdge == 'eY0' else 1
ind1 = sub2ind(M.vnEx, np.c_[ii, jj + posX])
ind2 = sub2ind(M.vnEy, np.c_[ii + posY, jj]) + M.nEx
IND = np.r_[ind1, ind2].flatten()
PXX = sp.coo_matrix((np.ones(2 * M.nC), (range(2 * M.nC), IND)),
shape=(2 * M.nC, M.nE)).tocsr()
if M._meshType == 'Curv':
I2x2 = inv2X2BlockDiagonal(getSubArray(eT1[0], [i, j + posX]),
getSubArray(eT1[1], [i, j + posX]),
getSubArray(eT2[0], [i + posY, j]),
getSubArray(eT2[1], [i + posY, j]))
PXX = I2x2 * PXX
return PXX
def Pxx(xFace, yFace):
"""
xFace is 'fXp' or 'fXm'
yFace is 'fYp' or 'fYm'
"""
# no | node | f1 | f2
# 00 | i ,j | i , j | i, j
# 10 | i+1,j | i+1, j | i, j
# 01 | i ,j+1 | i , j | i, j+1
# 11 | i+1,j+1 | i+1, j | i, j+1
posFx = 0 if xFace == 'fXm' else 1
posFy = 0 if yFace == 'fYm' else 1
ind1 = sub2ind(M.vnFx, np.c_[ii + posFx, jj])
ind2 = sub2ind(M.vnFy, np.c_[ii, jj + posFy]) + M.nFx
IND = np.r_[ind1, ind2].flatten()
PXX = sp.csr_matrix((np.ones(2 * M.nC), (range(2 * M.nC), IND)),
shape=(2 * M.nC, M.nF))
if M._meshType == 'Curv':
I2x2 = inv2X2BlockDiagonal(getSubArray(fN1[0], [i + posFx, j]),
getSubArray(fN1[1], [i + posFx, j]),
getSubArray(fN2[0], [i, j + posFy]),
getSubArray(fN2[1], [i, j + posFy]))
PXX = I2x2 * PXX
return PXX
def Pxxx(xEdge, yEdge, zEdge):
# no | node | e1 | e2 | e3
# 000 | i ,j ,k | i ,j ,k | i ,j ,k | i ,j ,k
# 100 | i+1,j ,k | i ,j ,k | i+1,j ,k | i+1,j ,k
# 010 | i ,j+1,k | i ,j+1,k | i ,j ,k | i ,j+1,k
# 110 | i+1,j+1,k | i ,j+1,k | i+1,j ,k | i+1,j+1,k
# 001 | i ,j ,k+1 | i ,j ,k+1 | i ,j ,k+1 | i ,j ,k
# 101 | i+1,j ,k+1 | i ,j ,k+1 | i+1,j ,k+1 | i+1,j ,k
# 011 | i ,j+1,k+1 | i ,j+1,k+1 | i ,j ,k+1 | i ,j+1,k
# 111 | i+1,j+1,k+1 | i ,j+1,k+1 | i+1,j ,k+1 | i+1,j+1,k
posX = [0, 0] if xEdge == 'eX0' else [
1, 0
] if xEdge == 'eX1' else [0, 1] if xEdge == 'eX2' else [1, 1]
posY = [0, 0] if yEdge == 'eY0' else [
1, 0
] if yEdge == 'eY1' else [0, 1] if yEdge == 'eY2' else [1, 1]
posZ = [0, 0] if zEdge == 'eZ0' else [
1, 0
] if zEdge == 'eZ1' else [0, 1] if zEdge == 'eZ2' else [1, 1]
ind1 = sub2ind(M.vnEx, np.c_[ii, jj + posX[0], kk + posX[1]])
ind2 = sub2ind(M.vnEy, np.c_[ii + posY[0], jj,
kk + posY[1]]) + M.nEx
ind3 = sub2ind(M.vnEz, np.c_[ii + posZ[0], jj + posZ[1],
kk]) + M.nEx + M.nEy
IND = np.r_[ind1, ind2, ind3].flatten()
PXXX = sp.coo_matrix((np.ones(3 * M.nC), (range(3 * M.nC), IND)),
shape=(3 * M.nC, M.nE)).tocsr()
if M._meshType == 'Curv':
I3x3 = inv3X3BlockDiagonal(
getSubArray(eT1[0], [i, j + posX[0], k + posX[1]]),
getSubArray(eT1[1], [i, j + posX[0], k + posX[1]]),
getSubArray(eT1[2], [i, j + posX[0], k + posX[1]]),
getSubArray(eT2[0], [i + posY[0], j, k + posY[1]]),
getSubArray(eT2[1], [i + posY[0], j, k + posY[1]]),
getSubArray(eT2[2], [i + posY[0], j, k + posY[1]]),
getSubArray(eT3[0], [i + posZ[0], j + posZ[1], k]),
getSubArray(eT3[1], [i + posZ[0], j + posZ[1], k]),
getSubArray(eT3[2], [i + posZ[0], j + posZ[1], k]))
PXXX = I3x3 * PXXX
return PXXX
def Pxxx(xFace, yFace, zFace):
"""
xFace is 'fXp' or 'fXm'
yFace is 'fYp' or 'fYm'
zFace is 'fZp' or 'fZm'
"""
# no | node | f1 | f2 | f3
# 000 | i ,j ,k | i , j, k | i, j , k | i, j, k
# 100 | i+1,j ,k | i+1, j, k | i, j , k | i, j, k
# 010 | i ,j+1,k | i , j, k | i, j+1, k | i, j, k
# 110 | i+1,j+1,k | i+1, j, k | i, j+1, k | i, j, k
# 001 | i ,j ,k+1 | i , j, k | i, j , k | i, j, k+1
# 101 | i+1,j ,k+1 | i+1, j, k | i, j , k | i, j, k+1
# 011 | i ,j+1,k+1 | i , j, k | i, j+1, k | i, j, k+1
# 111 | i+1,j+1,k+1 | i+1, j, k | i, j+1, k | i, j, k+1
posX = 0 if xFace == 'fXm' else 1
posY = 0 if yFace == 'fYm' else 1
posZ = 0 if zFace == 'fZm' else 1
ind1 = sub2ind(M.vnFx, np.c_[ii + posX, jj, kk])
ind2 = sub2ind(M.vnFy, np.c_[ii, jj + posY, kk]) + M.nFx
ind3 = sub2ind(M.vnFz, np.c_[ii, jj, kk + posZ]) + M.nFx + M.nFy
IND = np.r_[ind1, ind2, ind3].flatten()
PXXX = sp.coo_matrix((np.ones(3 * M.nC), (range(3 * M.nC), IND)),
shape=(3 * M.nC, M.nF)).tocsr()
if M._meshType == 'Curv':
I3x3 = inv3X3BlockDiagonal(
getSubArray(fN1[0], [i + posX, j, k]),
getSubArray(fN1[1], [i + posX, j, k]),
getSubArray(fN1[2], [i + posX, j, k]),
getSubArray(fN2[0], [i, j + posY, k]),
getSubArray(fN2[1], [i, j + posY, k]),
getSubArray(fN2[2], [i, j + posY, k]),
getSubArray(fN3[0], [i, j, k + posZ]),
getSubArray(fN3[1], [i, j, k + posZ]),
getSubArray(fN3[2], [i, j, k + posZ]))
PXXX = I3x3 * PXXX
return PXXX
def NMOstack(data, xorig, time, v):
if np.isscalar(v):
v = np.ones_like(time) * v
Time = (time.reshape([1, -1])).repeat(data.shape[0], axis=0)
singletrace = np.zeros(data.shape[1])
for i in range(time.size):
toffset = np.sqrt(xorig**2 / v[i]**2 + time[i]**2)
Time = (time.reshape([1, -1])).repeat(data.shape[0], axis=0)
Toffset = (toffset.reshape([-1, 1])).repeat(data.shape[1], axis=1)
indmin = np.argmin(abs(Time - Toffset), axis=1)
singletrace[i] = (mkvc(data)[sub2ind(
data.shape, np.c_[np.arange(data.shape[0]), indmin])]).sum()
return singletrace
def test_sub2ind(self):
x = np.ones((5,2))
self.assertTrue(np.all(sub2ind(x.shape, [0,0]) == [0]))
self.assertTrue(np.all(sub2ind(x.shape, [4,0]) == [4]))
self.assertTrue(np.all(sub2ind(x.shape, [0,1]) == [5]))
self.assertTrue(np.all(sub2ind(x.shape, [4,1]) == [9]))
self.assertTrue(np.all(sub2ind(x.shape, [[4,1]]) == [9]))
self.assertTrue(np.all(sub2ind(x.shape, [[0,0],[4,0],[0,1],[4,1]]) == [0,4,5,9]))
def test_sub2ind(self):
x = np.ones((5, 2))
self.assertTrue(np.all(sub2ind(x.shape, [0, 0]) == [0]))
self.assertTrue(np.all(sub2ind(x.shape, [4, 0]) == [4]))
self.assertTrue(np.all(sub2ind(x.shape, [0, 1]) == [5]))
self.assertTrue(np.all(sub2ind(x.shape, [4, 1]) == [9]))
self.assertTrue(np.all(sub2ind(x.shape, [[4, 1]]) == [9]))
self.assertTrue(
np.all(
sub2ind(x.shape, [[0, 0], [4, 0], [0, 1], [4, 1]]) ==
[0, 4, 5, 9]))