Python Cardiobase 예제들

예제 #1

파일: db_set_params.py 프로젝트: SBlincov/pyecgdel

DBConfig.root = 'pyecgdel'
DBConfig.data_catalogue = 'Data'

DBConfig.config_params = 'properties.txt'
DBConfig.p_params = 'p_params.txt'
DBConfig.qrs_params = 'qrs_params.txt'
DBConfig.t_params = 't_params.txt'
DBConfig.filter_params = 'filter_params.txt'

init_params(params_type=ParamsType.config_params)
init_params(params_type=ParamsType.p_params)
init_params(params_type=ParamsType.qrs_params)
init_params(params_type=ParamsType.t_params)
init_params(params_type=ParamsType.filter_params)

cb = Cardiobase()
cb.connect()

hash_data_config_params = ConfigParams
hash_data_p_params = PParams
hash_data_qrs_params = QRSParams
hash_data_t_params = TParams
hash_data_filter_params = FilterParams

id_hash_params = 24
num_inserted_rows_config_params = cb.update_hash_row_data(id_hash_params, 0, hash_data_config_params)
num_inserted_rows_p_params = cb.update_hash_row_data(id_hash_params, 1, hash_data_p_params)
num_inserted_rows_qrs_params = cb.update_hash_row_data(id_hash_params, 2, hash_data_qrs_params)
num_inserted_rows_t_params = cb.update_hash_row_data(id_hash_params, 3, hash_data_t_params)
num_inserted_rows_filter_params = cb.update_hash_row_data(id_hash_params, 4, hash_data_filter_params)
cb.commit()

예제 #2

파일: test_db_behaviour.py 프로젝트: SBlincov/pyecgdel

from Source.CardioBase.cardiobase import Cardiobase

id_file = 703

cb = Cardiobase()
cb.connect()
cb.cardio_event("SIGNALS", "PARSE_EDF_DONE", id_file)

cb.disconnect()

예제 #3

DBConfig.config_params = 'properties.txt'
DBConfig.p_params = 'p_params.txt'
DBConfig.qrs_params = 'qrs_params.txt'
DBConfig.t_params = 't_params.txt'
DBConfig.filter_params = 'filter_params.txt'

init_params(params_type=ParamsType.config_params)
init_params(params_type=ParamsType.p_params)
init_params(params_type=ParamsType.qrs_params)
init_params(params_type=ParamsType.t_params)
init_params(params_type=ParamsType.filter_params)

id_file = 703

cb = Cardiobase()
cb.connect()

leads_names = ConfigParams['LEADS_NAMES']

columns_names = []

for lead_name in leads_names:
    columns_names.append(lead_name + "_filtrated")
    columns_names.append(lead_name + "_p_delineation")
    columns_names.append(lead_name + "_qrs_delineation")
    columns_names.append(lead_name + "_t_delineation")
    columns_names.append(lead_name + "_characteristics")

data = cb.bulk_data_get(columns_names, "id_file=" + str(id_file))

예제 #4

from Source.Model.main.ecg.ecg import *
from Source.CardioBase.cardiobase import Cardiobase

id_file = 1007

cb = Cardiobase()
cb.connect()

params_hash = cb.get_hash(24)

config_params_from_hash = params_hash['data'][0]
p_params_from_hash = params_hash['data'][1]
qrs_params_from_hash = params_hash['data'][2]
t_params_from_hash = params_hash['data'][3]
filter_params_from_hash = params_hash['data'][4]

leads_names = ConfigParams['LEADS_NAMES']

예제 #5

파일: db_set_single.py 프로젝트: SBlincov/pyecgdel

DBConfig.root = 'pyecgdel'
DBConfig.data_catalogue = 'Data'

DBConfig.config_params = 'properties.txt'
DBConfig.p_params = 'p_params.txt'
DBConfig.qrs_params = 'qrs_params.txt'
DBConfig.t_params = 't_params.txt'
DBConfig.filter_params = 'filter_params.txt'

init_params(params_type=ParamsType.config_params)
init_params(params_type=ParamsType.p_params)
init_params(params_type=ParamsType.qrs_params)
init_params(params_type=ParamsType.t_params)
init_params(params_type=ParamsType.filter_params)

cb = Cardiobase()
cb.connect()

leads_names = ConfigParams['LEADS_NAMES']

columns_names = []

for lead_name in leads_names:
    columns_names.append(lead_name + "_filtrated")
    columns_names.append(lead_name + "_p_delineation")
    columns_names.append(lead_name + "_qrs_delineation")
    columns_names.append(lead_name + "_t_delineation")
    columns_names.append(lead_name + "_characteristics")

record_name = 'record_1007'

예제 #6

파일: db_get_original_delineation.py 프로젝트: SBlincov/pyecgdel

from Source.CardioBase.cardiobase import Cardiobase
from Source.Model.main.ecg.ecg import *

DBConfig.name = 'shiller'
DBConfig.root = 'pyecgdel'
DBConfig.data_catalogue = 'Data'

DBConfig.config_params = 'properties.txt'
DBConfig.p_params = 'p_params.txt'
DBConfig.qrs_params = 'qrs_params.txt'
DBConfig.t_params = 't_params.txt'
DBConfig.filter_params = 'filter_params.txt'

db_path = DBConfig.get_db_path()

cb = Cardiobase()
cb.connect()

max_id_file = 0

columns = ["json_R_QRS_ON", "json_R_QRS_OFF", "json_R_P_ON", "json_R_T_OFF"]

for column_id in range(0, len(columns)):

    column = columns[column_id]

    #data = cb.bulk_data_get([column], "device_model='AT-101' AND id_file>" + str(max_id_file))
    data = cb.bulk_data_get([column], "device_model='AT-101'")
    records_ids = data['id']
    ecg_data = data['data']

예제 #7

# -*- coding: utf-8 -*-

import os

import numpy as np

from Source.CardioBase.cardiobase import Cardiobase

cb = Cardiobase()
cb.connect()
col = cb.get_columns()

patients = np.loadtxt(
    'C:/Study/CyberHeart/trunk/diagnostics/database/ptbdb/patients.txt',
    dtype=np.int64)
path = 'C:/Study/CyberHeart/trunk/diagnostics/database/ptbdb/patient_'

for i in range(1, 1):
    for x in os.listdir(path + str(i)):
        d = {}
        rec_path = path + str(i) + '/' + x
        id_file = cb.create_file(int(patients[i - 1]),
                                 str(patients[i - 1]) + '_' + x)
        cb.close_file(id_file)

        for lead in cb.leads:

            original = np.loadtxt(rec_path + '/lead_' + lead + '/original.txt')
            filtrated = np.loadtxt(rec_path + '/lead_' + lead +
                                   '/filtrated.txt')
            p_delineation = np.loadtxt(rec_path + '/lead_' + lead +