job_values['processes'] = processes_per_node*nodes job_values['init_level'] = init_level job_values['hp_levs'] = hp_levs job_values['init_deg'] = init_deg job_values['penalty'] = penalty job_values['smooth_pred_sigma'] = smooth_pred_sigma job_values['smooth_pred_gammah'] = smooth_pred_gammah job_values['smooth_pred_gammap'] = smooth_pred_gammap job_values['domain_size'] = domain_size job_values['percentile'] = percentile cwd = os.getcwd() if run_path is '.': rwd = cwd else: rwd = cwd+'/'+run_path os.makedirs(rwd) job_input = CreateInputFile(job_script,job_values) # Create the run directory # # run_dir = rwd+"/run_dir" # print "Creating run directory %s..."%(run_dir) # os.makedirs(run_dir) os.symlink(bin_path+executable,rwd+'/'+executable) job_input.set_value({"rundir":rwd}) job_input.generate_input_file(fname = rwd+'/discosub.sh') os.chmod(rwd+'/discosub.sh',0700) # make job submission script executable
job_input = CreateInputFile(job_script,job_values) jobs = open(rwd+'/submit_all_jobs.sh','w') for i, replacement_value in enumerate(replacement_values): # Create the run directory # run_dir = rwd+"/run_dir"+str(i) print "Creating run directory %s..."%(run_dir) os.makedirs(run_dir) os.symlink(bin_path+executable,run_dir+'/'+executable) # shutil.copy(bin_path+'charmrun',run_dir) job_input.set_value({"rundir":run_dir}) # replace default values # if key_to_replace == 'nodes': # for scaling tests disco4est_args = str(levels[i])+" "+str(degree) job_input.set_value({'disco4est_args':disco4est_args}) job_input.set_value({'nodes':replacement_value}) job_input.set_value({'processes':processes[i]}) else: domain_input.set_value({key_to_replace:replacement_value}) job_input.generate_input_file(fname = run_dir+'/discosub.sh') # add job to job submission script # jobs.write('qsub '+run_dir+'/discosub.sh\n') jobs.close() os.chmod(rwd+'/submit_all_jobs.sh',0700) # make job submission script executable