def on_set_template_clicked(self):
# Create the specified template
## @var selected_filter
# String value. Indicates the filter type selected for the template
self.selected_filter = self.filterTypeComboBox.currentText()
## @var template
# Template insatance with the specified parameters.
self.template = Template(self.selected_filter,
omega_p1=self.passBand1DoubleSpinBox.value(),
omega_s1=self.stopBand1DoubleSpinBox.value(),
omega_p2=self.passBand2DoubleSpinBox.value(),
omega_s2=self.stopBand2DoubleSpinBox.value(),
att_p=self.maxAttnDoubleSpinBox.value(),
att_s=self.minAttnDoubleSpinBox.value(),
final=True)
# remove all plots widgets. in plotLayout
self.clear_plot_layout()
# plot template in specified axes
self.template_axes = self.template_fig.add_subplot(211)
self.template_axes_norm = self.template_fig.add_subplot(212)
self.template.plot_template_in_axes(self.template_axes,
self.template_axes_norm)
# add template_canas to plotLayout
self.plotsLayout.addWidget(self.template_canvas)
# show template_canvas
self.template_canvas.show()
# redraw template_canvas
self.template_canvas.draw()
# set template submitted to True
self.template_submited = True
self.validate_approximation()
pass
def __init__(self):
self.templates = []
self.extra_templates = []
self.category_nums = {}
os.chdir('Template')
#for e in glob.glob('*.txt'):
for e in TemplateFileNames:
cnt_e = 0
file = open(e + ".txt")
for line in file:
if line != '\n' and not Utl.startswith(line, '％％％％％'):
t = Template(line)
t.category = e
cnt_e += 1
if t.extra:
self.extra_templates.append(t)
else:
self.templates.append(t)
self.category_nums[e] = cnt_e
file.close()
self.templates.sort(
key=lambda x: x.num_match * 100 + x.num_restriction, reverse=True)
os.chdir('..')
pass # __init__
def validate_template(self):
selected_filter = self.filterTypeComboBox.currentText()
template = Template(selected_filter,
omega_p1=self.passBand1DoubleSpinBox.value(),
omega_s1=self.stopBand1DoubleSpinBox.value(),
omega_p2=self.passBand2DoubleSpinBox.value(),
omega_s2=self.stopBand2DoubleSpinBox.value(),
att_p=self.maxAttnDoubleSpinBox.value(),
att_s=self.minAttnDoubleSpinBox.value(),
final=False)
valid = template.is_valid()
self.setTemplateButton.setEnabled(valid)
def __init__(self):
self.mth = datetime.now().month
self.sheetName = 'interface1'
self.path = ''
self.pres = Template()
# pres.getDataWithTemplateOrder(templateWorkSheet, self.repos)
#self.google_cres="E:/downloads/JaneProject-f472d80e0028.json"
self.google_cres = "E:/downloads/JaneProject-f472d80e0028.json"
self.google = False
self.fileName = 'entityConfig.xlsx'
#self.fileName='/Users/pengwang/Downloads/entityConfig.xlsx'
self.googleFile = 'entityConfig'
#self.outputFile='/Users/pengwang/Downloads/output.xlsx'
self.outputFile = 'output.xlsx'
def automatic_cut_button(self, event):
Template.template_match()
'''
读入模版匹配后的图，消除之前的图，展示模版匹配的图
'''
image = wx.Image('picture\\match.png')
image_bitmap = image.ConvertToBitmap()
self.choose_image_bitmap.Destroy()
self.automatic_cut_bitmap = wx.StaticBitmap(
self,
-1,
image_bitmap,
pos=(100, 0),
size=(image_bitmap.GetWidth(), image_bitmap.GetHeight()))
def extractInfo(inTextFile):
stories = []
story_objects = []
with open(inTextFile) as inputFile:
text = ""
for line in inputFile:
p = re.match('^((DEV-MUC3|TST1-MUC3|TST2-MUC4)-[0-9]{4})', line)
if p:
if len(text) != 0:
stories.append(text)
text = ""
obj = Template(p.group(), '-', '-', '-', '-', '-', '-')
story_objects.append(obj)
else:
text += line.replace('\n', ' ').replace('\r', '')
if len(text) != 0:
stories.append(text)
for i in range(len(stories)):
findIncident(stories[i], story_objects[i])
test = findWeapon(stories[i], story_objects[i])
FindTarget(stories[i], story_objects[i])
FindVictim(stories[i], story_objects[i])
FindPerp(stories[i], story_objects[i])
FindOrg(stories[i], story_objects[i])
return story_objects
def readFile(self, filename):
template = configparser.ConfigParser()
template.optionxform = lambda option: option
template.read(self.path + filename)
template.sections()
# Control set value
if not 'MAIN' in template:
return 0
if not 'FIELDS' in template:
return 0
if not template['MAIN'].getboolean('Enable'):
return 0
templateName = template['MAIN']['TemplateName']
tableName = template['MAIN']['TableName']
fmt = []
fields = template['FIELDS']
for name in fields:
fmt.append(AttrObject(fields[name], name, None))
self.logger.info("INIT Template " + templateName)
return Template(templateName, tableName, fmt)
def list_comments(self, query, *args):
with Repository(db_file, table_name) as repository:
comments_tuple = repository.find_all()
comments = [
Comment(item[0], item[1], item[2]) for item in comments_tuple
]
return Template.render('comments.tpl', {"comments": comments})
def loadSkarphedChildren(self):
self.loadPublicKey()
self.getMaintenanceMode()
self.loadRendermode()
if 'skarphed.users.view' in self.serverRights:
self.users = Users(self)
self.addChild(self.users)
if 'skarphed.modules.install' in self.serverRights or 'skarphed.modules.uninstall' in self.serverRights:
self.modules = Modules(self)
self.addChild(self.modules)
if 'skarphed.roles.view' in self.serverRights:
self.roles = Roles(self)
self.addChild(self.roles)
if True: #'skarphed.sites.view' in self.serverRights
self.sites = Sites(self)
self.addChild(self.sites)
if True:
self.views = Views(self)
self.addChild(self.views)
if True: #'skarphed.template.modify' in self.serverRights
self.template = Template(self)
self.addChild(self.template)
if True: #'skarphed.operation.modify' in self.serverRights
self.operationManager = OperationManager(self)
#TODO: restliche implementieren
self.pokethread = PokeThread(self)
self.pokethread.start()
class PageEmpty(Container):
"""
Widget for minimalistic web pages. Simplified variant with less
arguments, but otherwise similar to Page.
Arguments:
headers: list of entries for the <head> section.
Example:
page = CTK.PageEmpty ()
page += CTK.RawHTML ('<p>Nothing to see here.</p>')
return page.Render()
"""
def __init__(self, headers=[], **kwargs):
Container.__init__(self, **kwargs)
self.headers = headers[:]
self.template = Template(content=PAGE_TEMPLATE_MINI)
def Render(self):
# Get the content render
render = Container.Render(self)
# Build the <head> text
self.headers += render.headers
head = "\n".join(uniq(self.headers))
self.template['head'] = head
self.template['body'] = render.html
# Render
txt = self.template.Render()
return Postprocess(txt)
def __init__(self, template=None, headers=None, helps=None, **kwargs):
Container.__init__(self, **kwargs)
self.js_header_end = True
if headers:
self._headers = HEADERS[:] + headers[:]
else:
self._headers = HEADERS[:]
if template:
self._template = template
else:
self._template = Template(content=PAGE_TEMPLATE_DEFAULT)
self._helps = []
for entry in helps or []:
self._helps.append(HelpEntry(entry[1], entry[0]))
def renderTemplate(template_path, template_parameters, result_path):
"""
Renders template with given data.
template_path - Path to template .odt file;
template_parameters - Parsed data to fill the template;
result_path - Path to result .odt file
Term "render" means creating new document by filling template with data.
Function perfoms following steps:
1) Extract content of template to temporary directory;
2) Render file styles.xml;
3) Render file content.xml;
4) Copy used pictures to "Pictures" directory;
5) Remove unused pictures from "Pictures" directory;
6) Update "META-INF/manifest.xml" with new pictures;
7) Pack temporary directory to result_path.
"""
temp_dir = basefilename(result_path)
extractAll(template_path, temp_dir)
styles_xml_path = os.path.join(temp_dir, 'styles.xml')
styles_xml = open(styles_xml_path, 'r').read()
t = Template(styles_xml, template_parameters)
rendered_styles_xml = t.render()
codecs.open(styles_xml_path, 'w', 'utf-8').write(rendered_styles_xml)
content_xml_path = os.path.join(temp_dir, 'content.xml')
content_xml = open(content_xml_path, 'r').read()
t = Template(content_xml, template_parameters)
rendered_content_xml = t.render()
codecs.open(content_xml_path, 'w', 'utf-8').write(rendered_content_xml)
image_replacements = t.imageUrls()
for key in image_replacements.iterkeys():
value = image_replacements[key]
for flow_chart_path in value:
dest_path = os.path.join(temp_dir, 'Pictures', os.path.basename(flow_chart_path))
shutil.copy2(flow_chart_path, dest_path)
replaceManifest(temp_dir, image_replacements)
cleanPictures(temp_dir, image_replacements.keys())
packAll(temp_dir, result_path)
if os.path.exists('Pictures'):
shutil.rmtree('Pictures')
if os.path.exists(temp_dir):
shutil.rmtree(temp_dir)
def load_template(file_path, chain_name='A'):
"""*load_template(file_path, chain_name='A')*
Loads a template structure from a PDB file.
Produces a Template object that can be saved in a variable.
Each template in ModeRNA has only one chain. By default, the chain
with id 'A' is loaded. Another chain id can be specified optionally
:Arguments:
* path+filename of a PDB structure file
* chain id (by default 'A')
"""
file_path = validate_filename(file_path)
t = Template(file_path, 'file', chain_name)
log.write_message('Template loaded from %s.\nTemplate sequence:\n%s\n' %
(file_path, t.get_sequence().seq_with_modifications))
return t
def add_missing_3p(self):
""" """
if self.alignment and len(self.recipe.add_fragment_3p)>0:
anchor5 = [r for r in self][-1]
ap_list = self.recipe.add_fragment_3p[0]
seq = Sequence(''.join([ap.target_letter.short_abbrev for ap in ap_list]))
all_resis = [r for r in Template(SINGLE_STRAND,'file', 'A')]
while len(all_resis)-1 <len(ap_list): all_resis=self._elongate_strand(all_resis)
frag_resis = all_resis[:len(ap_list)+1]
struc = ModernaStructure('residues',frag_resis)
frag = ModernaFragment5(struc, anchor5=anchor5, new_sequence=seq, keep=keep_first)
self.insert_fragment(frag)
class PageEmpty (Container):
def __init__ (self, headers=[], **kwargs):
Container.__init__ (self, **kwargs)
self.headers = headers[:]
self.template = Template (content = PAGE_TEMPLATE_MINI)
def Render(self):
# Get the content render
render = Container.Render(self)
# Build the <head> text
self.headers += render.headers
head = "\n".join (uniq(self.headers))
self.template['head'] = head
self.template['body'] = render.html
# Render
txt = self.template.Render()
return Postprocess (txt)
def __init__(self, the_packet_area, iserver):
Gtk.Box.__init__(self, spacing=10, orientation=Gtk.Orientation.VERTICAL)
self.set_homogeneous(False)
# components of the MessageTypeArea
self.msgtype_view = MessageType(iserver, the_packet_area)
self.dependency_view = Dependency(iserver, the_packet_area)
self.page_num = 0
title = Gtk.Label()
title.set_markup("<u><b><big> Message Type Area </big></b></u>")
title.set_xalign(0.05)
self.pack_start(title, True, True, 0)
notebook = Gtk.Notebook()
notebook.connect("switch_page", self.update_page)
pages = [('New/Modify', self.msgtype_view),
('Dependency', self.dependency_view),
('Template', Template()),
('Equivalency', Equivalency()),
('Generation', Generation())]
self.append_pages(notebook, pages)
self.pack_start(notebook, True, True, 0)
def process_word(self, tree_id: int, this_word_ind: int, root_id: int):
# если слова закончились
if this_word_ind == len(self.word_sequence.seq_basic):
return
# первое слово пропускаем
if this_word_ind == 0:
this_word_ind += 1
tree = self.tree_versions[tree_id]
word_basic = self.word_sequence.seq_basic[this_word_ind]
word = self.word_sequence.seq_normal[this_word_ind]
prev_word_basic = self.word_sequence.seq_basic[this_word_ind - 1]
template_info_arr = get_template_info_by_word(word_basic, prev_word=prev_word_basic)
# print(word + ' -> ' + word_basic + ':', str(len(template_info_arr)), 'options')
for template_info in template_info_arr:
# если это второе слово, у корня шаблончика color=1, name=root_name, если нужно
if this_word_ind == 1:
template_info['relatives'][0][1] = self.word_sequence.seq_normal[0]
template_info['relatives'][0][2] = 1
# если это последнее слово, у целевого слова в шаблончике color=1
if this_word_ind == len(self.word_sequence.seq_basic) - 1:
template_info['relatives'][len(template_info['relatives']) - 1][2] = 1
# добавляем остальные варианты
for template_info in template_info_arr[1:]:
new_tree = TreeVersion(id=len(self.tree_versions))
new_tree.relatives = copy.deepcopy(tree.relatives)
template = Template(template_info, word)
new_tree.add_template(template, root_id)
new_root_id = template.get_target_word_id()
self.tree_versions.append(new_tree)
self.process_word(new_tree.id, this_word_ind + 1, new_root_id)
# добавляем первый вариант шаблончика
template = Template(template_info_arr[0], word)
tree.add_template(template, root_id)
new_root_id = template.get_target_word_id()
self.process_word(tree_id, this_word_ind + 1, new_root_id)
def render(self, path, context, out):
liteCode = self.load(path,out);
template = Template(liteCode);
template.render(context,out);
args = vars(ap.parse_args())
#####################################################################################
input_image_path = args["input_image"]
template_directory = args["template_directory"]
output_directory = args["output_directory"]
non_max_suppression_threshold = args["NMS_Threshold"]
match_threshold = args["match_threshold"]
colors = get_color_codes()
templates = []
label = 1
for template_image in glob(template_directory + "/*.png"):
templates.append(
Template(image_path=template_image,
label=label,
color=colors[label - 1],
match_threshold=match_threshold))
label += 1
input_image = cv2.imread(input_image_path)
########################################################################
detection = predict(templates, input_image)
filtered_detection = get_filtered_detection(
detections=detection,
non_max_suppression_threshold=non_max_suppression_threshold)
cv2.imwrite(output_directory + "/image_with_detection.png",
plot_detection(input_image.copy(), filtered_detection))
print("Output Image saved to ", output_directory)
class FilterTool(QtWidgets.QMainWindow, FilterToolDesign.Ui_MainWindow):
def __init__(self, parent=None):
super(FilterTool, self).__init__(parent)
self.setupUi(self)
# configure to use latex interpreter
if find_executable('latex'):
mpl.rc('font', **{'family': 'serif', 'serif': ['Palatino']})
mpl.rc('text', usetex=True)
# array containing approximation types
self.approx_types = [
'butterworth', 'bessel', 'cheby_1', 'cheby_2', 'legendre', 'gauss',
'cauer'
]
# connect 'preview approximation' button to handler
self.previewApproxButton.clicked.connect(self.on_preview_clicked)
# connect clear approximation button to handler
self.clearApproxButton.clicked.connect(self.on_clear_previews_clicked)
# connect approximation type combo box to handler
self.approximationComboBox.currentIndexChanged.connect(
self.validate_approximation)
# connect 'Compute' button to handler.
self.computePushButton.clicked.connect(self.on_compute_clicked)
# connect 'Set Template' button to handler
self.setTemplateButton.clicked.connect(self.on_set_template_clicked)
# connect filter type combo box selection changed to handler
self.filterTypeComboBox.currentIndexChanged.connect(
self.on_filter_type_changed)
# connect spinboxes valueChanged to handlers
self.minAttnDoubleSpinBox.valueChanged.connect(self.validate_template)
self.maxAttnDoubleSpinBox.valueChanged.connect(self.validate_template)
self.passBand1DoubleSpinBox.valueChanged.connect(
self.validate_template)
self.passBand2DoubleSpinBox.valueChanged.connect(
self.validate_template)
self.stopBand1DoubleSpinBox.valueChanged.connect(
self.validate_template)
self.stopBand2DoubleSpinBox.valueChanged.connect(
self.validate_template)
# connect approximation input config parameters widgets to handler
self.approximationComboBox.currentIndexChanged.connect(
self.validate_approximation)
self.minMaxRadioButton.clicked.connect(self.validate_approximation)
self.minOrderSpinBox.valueChanged.connect(self.validate_approximation)
self.maxOrderSpinBox.valueChanged.connect(self.validate_approximation)
self.maxQRadioButton.clicked.connect(self.validate_approximation)
self.maxQdoubleSpinBox.valueChanged.connect(
self.validate_approximation)
self.customOrderRadioButton.clicked.connect(
self.validate_approximation)
self.customOrderSpinBox.valueChanged.connect(
self.validate_approximation)
# connect plot settings to handlers
self.attenuationCurvesCheckBox.clicked.connect(
self.validate_approximation)
self.phaseCheckBox.clicked.connect(self.validate_approximation)
self.groupDelayCheckBox.clicked.connect(self.validate_approximation)
self.stepResponseCheckBox.clicked.connect(self.validate_approximation)
self.sPlaneCheckBox.clicked.connect(self.validate_approximation)
self.freqResponseCheckBox.clicked.connect(self.validate_approximation)
# connect current approximation in stages page changed
self.current_approx_comboBox.currentIndexChanged.connect(
self.on_current_approx_changed)
# connect stage plot type to handler
self.stage_plot_comboBox.currentIndexChanged.connect(
self.on_current_stage_plot_type_changed)
# connect current stage combobox to handler
self.current_stage_comboBox.currentIndexChanged.connect(
self.on_current_stage_changed)
# connect appoximation selected pole changed
self.poles_listWidget.currentItemChanged.connect(
self.on_selected_approx_pole_changed)
# connect approximation slected zero changed
self.zeros_listWidget.currentItemChanged.connect(
self.on_selected_approx_zero_changed)
# connect remove pole from stage button to handler
self.remove_poleButton.clicked.connect(self.on_remove_stage_pole)
# connect remove zero from stage button to handler
self.remove_zeroButton.clicked.connect(self.on_remove_stage_zero)
# connect add pole to stage to handler
self.add_poleButton.clicked.connect(self.on_add_pole)
# connect add zero to stage to handler
self.add_zeroButton.clicked.connect(self.on_add_zero)
# connect stage gain spin box to handler
self.gain_spinBox.valueChanged.connect(self.on_stage_gain_changed)
# connect remove stage button to handler
self.delete_stageButton.clicked.connect(self.on_remove_stage)
# hide stopband2 & passband2 widgets
self.hide_pass_stop_2()
# validate template parameters
self.validate_template()
# set template_submited to False
## @var template_submited
# Bool variable indicatign whether the template has been submitted
self.template_submited = False
# validate approximation settings
self.validate_approximation()
## @var validation_computed
# Bool variable indicating whether the approximation has been computed
self.validation_computed = False
# Disable save pushbutton
self.saveResultsPushButton.setEnabled(False)
# setup figures and canvases
self.set_mpl()
# array containing every preview ploted
self.plotted_previews = []
# initialize plot options
self.any_plots_checked()
## @var current_stage
# vriable containing the current selected stage in stages tab
self.current_stage = None
# indica si alguna vez se ploteo esto
self.att_plotted = False
self.phase_plotted = False
self.step_plotted = False
self.s_plane_plotted = False
self.freq_response_plotted = False
self.group_delay_plotted = False
self.preview_already_plotted = False
self.currentApproximation = None
self.approximations = []
self.zerosGroupBoxes = []
self.polesGroupBoxes = []
self.stages = []
self.mainStageFigure = None
## Helper to hide unused GUI widgets.
# Hides unused frequency input fields when 'Low-pass' or 'High-pass'
# @details filter type is selected.
# @param self The object pointer
def hide_pass_stop_2(self):
self.stopBand2_label.hide()
self.stopBand2DoubleSpinBox.hide()
self.passBand2_label.hide()
self.passBand2DoubleSpinBox.hide()
## Helper to show hided GUI widgets
# @details Shows hided frequency input fields when needed.
# @param self The object pointer
def show_pass_stop_2(self):
self.stopBand2_label.show()
self.stopBand2DoubleSpinBox.show()
self.passBand2_label.show()
self.passBand2DoubleSpinBox.show()
## Helper to instantiate figures and canvas
# @details Instantiates every figure and canvas to be used by de program
# @param self The object pointer
def set_mpl(self):
self.template_fig = Figure()
self.template_canvas = FigureCanvas(self.template_fig)
self.att_fig = Figure()
self.att_canvas = FigureCanvas(self.att_fig)
self.phase_fig = Figure()
self.phase_canvas = FigureCanvas(self.phase_fig)
self.group_fig = Figure()
self.group_canvas = FigureCanvas(self.group_fig)
self.step_fig = Figure()
self.step_canvas = FigureCanvas(self.step_fig)
self.s_plane_fig = Figure()
self.s_plane_canvas = FigureCanvas(self.s_plane_fig)
self.freq_fig = Figure()
self.freq_canvas = FigureCanvas(self.freq_fig)
self.composition_figure = Figure()
self.composition_canvas = FigureCanvas(self.composition_figure)
self.stage_figure = Figure()
self.stage_canvas = FigureCanvas(self.stage_figure)
self.stage_layout.addWidget(self.stage_canvas)
self.template_toolbar = NavigationToolbar(self.template_canvas, self)
self.plotsLayout.addWidget(self.template_canvas)
self.plotsLayout.addWidget(self.template_toolbar)
## Handles a filter type combo box index change.
# @details Executes whenever the selected index in filter type combo box changes.
# @param self The object pointer
def on_filter_type_changed(self):
self.validate_template()
selectedText = self.filterTypeComboBox.currentText()
if selectedText == 'Low-pass':
self.hide_pass_stop_2()
if selectedText == 'High-pass':
self.hide_pass_stop_2()
if selectedText == 'Band-pass':
self.show_pass_stop_2()
if selectedText == 'Band-reject':
self.show_pass_stop_2()
return
## Handler that validates a new template parameter setting.
# @details Whenever a template parameter is changed, the new configuration is
# validated to determine if the user can submit it.
# @param self The object pointer
def validate_template(self):
selected_filter = self.filterTypeComboBox.currentText()
template = Template(selected_filter,
omega_p1=self.passBand1DoubleSpinBox.value(),
omega_s1=self.stopBand1DoubleSpinBox.value(),
omega_p2=self.passBand2DoubleSpinBox.value(),
omega_s2=self.stopBand2DoubleSpinBox.value(),
att_p=self.maxAttnDoubleSpinBox.value(),
att_s=self.minAttnDoubleSpinBox.value(),
final=False)
valid = template.is_valid()
self.setTemplateButton.setEnabled(valid)
## Helper to clear all figures
# @details Deletes every canvas contained in the plotslayout
# @param self The object pointer
def clear_plot_layout(self):
for i in reversed(range(self.plotsLayout.count())):
if isinstance(self.plotsLayout.itemAt(i), FigureCanvas):
self.plotsLayout.itemAt(i).widget().figure.clf()
self.plotsLayout.itemAt(i).widget().draw()
self.plotsLayout.itemAt(i).widget().setParent(None)
## Set template handler
# @details Executes when a new template is submitted (previously validated)
# and plots it to the specified axes.
# @param self The object pointer
def on_set_template_clicked(self):
# Create the specified template
## @var selected_filter
# String value. Indicates the filter type selected for the template
self.selected_filter = self.filterTypeComboBox.currentText()
## @var template
# Template insatance with the specified parameters.
self.template = Template(self.selected_filter,
omega_p1=self.passBand1DoubleSpinBox.value(),
omega_s1=self.stopBand1DoubleSpinBox.value(),
omega_p2=self.passBand2DoubleSpinBox.value(),
omega_s2=self.stopBand2DoubleSpinBox.value(),
att_p=self.maxAttnDoubleSpinBox.value(),
att_s=self.minAttnDoubleSpinBox.value(),
final=True)
# remove all plots widgets. in plotLayout
self.clear_plot_layout()
# plot template in specified axes
self.template_axes = self.template_fig.add_subplot(211)
self.template_axes_norm = self.template_fig.add_subplot(212)
self.template.plot_template_in_axes(self.template_axes,
self.template_axes_norm)
# add template_canas to plotLayout
self.plotsLayout.addWidget(self.template_canvas)
# show template_canvas
self.template_canvas.show()
# redraw template_canvas
self.template_canvas.draw()
# set template submitted to True
self.template_submited = True
self.validate_approximation()
pass
## Validates the approximation settings
# @details Verifies if the approximation settings are valid and whether a template is
# submitted.
# @param self The object pointer
# @return A boolean value. True if approximation is ready to compute. False otherwise
def validate_approximation(self):
valid = False
approx_index = self.approximationComboBox.currentIndex()
self.approx_type = self.approx_types[approx_index]
if approx_index == 4 or approx_index == 5: # Bessel, Legendre y Gauss
self.minMaxRadioButton.setEnabled(False)
else:
self.minMaxRadioButton.setEnabled(True)
if self.customOrderRadioButton.isChecked():
self.restriction = 'custom_order'
valid = self.customOrderSpinBox.value() > 0
elif self.maxQRadioButton.isChecked():
self.restriction = 'max_q'
valid = self.maxQdoubleSpinBox.value() > 0
elif self.minMaxRadioButton.isChecked():
self.restriction = 'min_max_order'
valid = self.minOrderSpinBox.value() < self.maxOrderSpinBox.value()
valid = valid and self.minOrderSpinBox.value() > 0
valid = valid and self.maxOrderSpinBox.value() > 0
else:
valid = False
can_compute = valid and self.any_plots_checked()
self.computePushButton.setEnabled(can_compute
and self.template_submited)
self.previewApproxButton.setEnabled(valid and self.template_submited)
## Checks if any plot option selected
# @details Verifies if any of the plots option check-boxes is checked
# @param self The object pointer
# @return A boolean value. True if any check-box checked. False otherwise
def any_plots_checked(self):
ret = False
## @var plot_attenuation
# Boolean variable that indicates whether the attenuation curve ust be plotted
self.plot_attenuation = self.attenuationCurvesCheckBox.isChecked()
## @var plot_phase
# Boolean variable that indicates whether the phase response must be plotted
self.plot_phase = self.phaseCheckBox.isChecked()
## @var plot_group_delay
# Boolean variable that indicates whether the group delay must be plotted
self.plot_group_delay = self.groupDelayCheckBox.isChecked()
## @var plot_step_response
# Boolean variable that indicates whether the step response must be plotted
self.plot_step_response = self.stepResponseCheckBox.isChecked()
## @var plot_s_plane
# Boolean variable that indicates whether the S plane must be plotted
self.plot_s_plane = self.sPlaneCheckBox.isChecked()
## @var plot_freq_resp
# Boolean varialbe that indicates whether the frequency response must be plotted
self.plot_freq_resp = self.freqResponseCheckBox.isChecked()
ret = self.plot_attenuation or self.plot_phase or self.plot_group_delay or self.plot_step_response or self.plot_s_plane or self.plot_freq_resp
return ret
## Active approx selection changed handler
# @details Handles the selection of a different active approximation
# in the stages tab.
def on_current_approx_changed(self):
selection = str(self.current_approx_comboBox.currentText())
if selection == 'None':
self.currentApproximation = None
else:
for approximation in self.approximations:
if selection == approximation.legend:
self.currentApproximation = approximation
# Clear Stage Figure
self.stage_figure.clf()
# clear poles list
self.poles_listWidget.clear()
# clear zeros list
self.zeros_listWidget.clear()
# clear stage combobox
self.current_stage_comboBox.clear()
# if current approx is not None:
if self.currentApproximation != None:
# clear poles list
self.poles_listWidget.clear()
# Add all poles to list
for pole_pair in self.currentApproximation.poles_pairs:
self.poles_listWidget.addItem(
QtWidgets.QListWidgetItem(pole_pair.label))
# Add all zeros to list
for zero_pair in self.currentApproximation.zeros_pairs:
self.zeros_listWidget.addItem(
QtWidgets.QListWidgetItem(zero_pair.label))
# disable add pole and zeros buttons if list are empty
self.add_poleButton.setEnabled(self.poles_listWidget.count() > 0)
self.add_zeroButton.setEnabled(self.zeros_listWidget.count() > 0)
selected_stage_plot = str(self.stage_plot_comboBox.currentText())
for stage in self.currentApproximation.stages_2:
self.current_stage_comboBox.addItem('Stage {}'.format(
str(stage.id)))
# set first stage by defult
self.current_stage_comboBox.setCurrentIndex(0)
# Stages poles and zeros
if selected_stage_plot == 'Poles & Zeros':
self.currentApproximation.stages_2[0].plot_s_plane_to_figure(
self.stage_figure)
self.stage_polesList.setVisible(True)
self.stage_zerosList.setVisible(True)
# list stage poles and zeros
self.stage_zerosList.clear()
for zero_pair in self.current_stage.zero_pairs:
self.stage_zerosList.addItem(
QtWidgets.QListWidgetItem(zero_pair.label))
self.stage_polesList.clear()
for pole_pair in self.current_stage.pole_pairs:
self.stage_polesList.addItem(
QtWidgets.QListWidgetItem(pole_pair.label))
else: # else hide
self.stage_polesList.setVisible(False)
self.stage_zerosList.setVisible(False)
self.update_composition()
self.stage_canvas.draw()
## New stage plot type handler
# @details Handles the selection of a different plot for the stage
def on_current_stage_plot_type_changed(self):
selected_stage_plot = str(self.stage_plot_comboBox.currentText())
if selected_stage_plot == 'Transfer':
self.current_stage.plot_transfer_to_figure(self.stage_figure)
elif selected_stage_plot == 'Poles & Zeros':
self.current_stage.plot_s_plane_to_figure(self.stage_figure)
# list stage poles and zeros
self.stage_zerosList.clear()
for zero_pair in self.current_stage.zero_pairs:
self.stage_zerosList.addItem(
QtWidgets.QListWidgetItem(zero_pair.label))
self.stage_polesList.clear()
for pole_pair in self.current_stage.pole_pairs:
self.stage_polesList.addItem(
QtWidgets.QListWidgetItem(pole_pair.label))
self.stage_canvas.draw()
## Stage selector handler
# @details Handles the selection of a different 'active' stage
def on_current_stage_changed(self):
# TODO: en vez de limpiar el canvas, borrar la figure.
# Clear figure
self.stage_figure.clf()
# get the stage index
index = self.current_stage_comboBox.currentIndex()
self.current_stage = self.currentApproximation.stages_2[index]
selected_stage_plot = str(self.stage_plot_comboBox.currentText())
# Stages poles and zeros
if selected_stage_plot == 'Poles & Zeros':
# list stage poles and zeros
self.stage_zerosList.clear()
self.current_stage.plot_s_plane_to_figure(self.stage_figure)
for zero_pair in self.current_stage.zero_pairs:
self.stage_zerosList.addItem(
QtWidgets.QListWidgetItem(zero_pair.label))
self.stage_polesList.clear()
for pole_pair in self.current_stage.pole_pairs:
self.stage_polesList.addItem(
QtWidgets.QListWidgetItem(pole_pair.label))
elif selected_stage_plot == 'Transfer':
self.current_stage.plot_transfer_to_figure(self.stage_figure)
self.stage_canvas.draw()
empty_stages = self.current_stage_comboBox.count() == 0
if empty_stages:
self.stage_figure.clf()
self.composition_figure.clear()
## Handles te selection of a new approx pole
def on_selected_approx_pole_changed(self):
# if pair is already used disable add pole button.
index = self.poles_listWidget.currentRow()
if self.currentApproximation.poles_pairs[
index].used or self.current_stage.pole_pairs:
self.add_poleButton.setEnabled(False)
else:
self.add_poleButton.setEnabled(True)
## Handles te selection of a new approx zero
def on_selected_approx_zero_changed(self):
# if pair is already used disable add pole button.
index = self.zeros_listWidget.currentRow()
if self.currentApproximation.zeros_pairs[
index].used or self.current_stage.zero_pairs:
self.add_zeroButton.setEnabled(False)
else:
self.add_zeroButton.setEnabled(True)
## Handles the click on remove stage pole
def on_remove_stage_pole(self):
index = self.stage_polesList.currentRow()
pole_pair = self.current_stage.pole_pairs[index]
self.current_stage.remove_pole_pair(pole_pair)
# update stage poles and zeros list
self.stage_zerosList.clear()
for zero_pair in self.current_stage.zero_pairs:
self.stage_zerosList.addItem(
QtWidgets.QListWidgetItem(zero_pair.label))
self.stage_polesList.clear()
for pole_pair in self.current_stage.pole_pairs:
self.stage_polesList.addItem(
QtWidgets.QListWidgetItem(pole_pair.label))
self.current_stage.plot_s_plane_to_figure(self.stage_figure)
self.stage_canvas.draw()
self.update_composition()
self.on_selected_approx_pole_changed()
## Handles the click on remove stage zero
def on_remove_stage_zero(self):
index = self.stage_zerosList.currentRow()
zero_pair = self.current_stage.zero_pairs[index]
self.current_stage.remove_zero_pair(zero_pair)
# update stage poles and zeros list
self.stage_zerosList.clear()
for zero_pair in self.current_stage.zero_pairs:
self.stage_zerosList.addItem(
QtWidgets.QListWidgetItem(zero_pair.label))
self.stage_polesList.clear()
for pole_pair in self.current_stage.pole_pairs:
self.stage_polesList.addItem(
QtWidgets.QListWidgetItem(pole_pair.label))
self.current_stage.plot_s_plane_to_figure(self.stage_figure)
self.stage_canvas.draw()
self.update_composition()
self.on_selected_approx_zero_changed()
## Handles the click on add pole to stage
def on_add_pole(self):
index = self.poles_listWidget.currentRow()
pair = self.currentApproximation.poles_pairs[index]
self.current_stage.add_pole_pair(pair)
selected_plot = str(self.stage_plot_comboBox.currentText())
if selected_plot == 'Poles & Zeros':
self.current_stage.plot_s_plane_to_figure(self.stage_figure)
self.stage_canvas.draw()
# list stage poles and zeros
self.stage_zerosList.clear()
for zero_pair in self.current_stage.zero_pairs:
self.stage_zerosList.addItem(
QtWidgets.QListWidgetItem(zero_pair.label))
self.stage_polesList.clear()
for pole_pair in self.current_stage.pole_pairs:
self.stage_polesList.addItem(
QtWidgets.QListWidgetItem(pole_pair.label))
self.on_selected_approx_pole_changed()
self.update_composition()
## Handles the click on add zero to stage
def on_add_zero(self):
index = self.zeros_listWidget.currentRow()
pair = self.currentApproximation.zeros_pairs[index]
self.current_stage.add_zero_pair(pair)
selected_plot = str(self.stage_plot_comboBox.currentText())
if selected_plot == 'Poles & Zeros':
self.current_stage.plot_s_plane_to_figure(self.stage_figure)
self.stage_canvas.draw()
# list stage poles and zeros
self.stage_zerosList.clear()
for zero_pair in self.current_stage.zero_pairs:
self.stage_zerosList.addItem(
QtWidgets.QListWidgetItem(zero_pair.label))
self.stage_polesList.clear()
for pole_pair in self.current_stage.pole_pairs:
self.stage_polesList.addItem(
QtWidgets.QListWidgetItem(pole_pair.label))
self.on_selected_approx_zero_changed()
self.update_composition()
## Handles the gain change
def on_stage_gain_changed(self):
self.current_stage.gain = self.gain_spinBox.value()
self.update_composition()
## Updates the transfer generated by the stages
def update_composition(self):
zeros = []
poles = []
gain = 1
for stage in self.currentApproximation.stages_2:
for zero_pair in stage.zero_pairs:
for zero in zero_pair.points:
zeros.append(zero)
for pole_pair in stage.pole_pairs:
for pole in pole_pair.points:
poles.append(pole)
gain *= stage.gain
title = '{0} Accumulated Stages'.format(
self.currentApproximation.legend)
legend = 'Stage Composition Freq. Response'
self.composition_figure.clear()
axes = self.composition_figure.add_subplot(111)
sys = signal.TransferFunction(signal.ZerosPolesGain(
zeros, poles, gain))
w, mag, phase = signal.bode(sys)
axes.semilogx(w, mag, label=legend)
axes.set_xlabel(r'$\omega [rad/seg]$')
axes.set_ylabel(r'Mag')
axes.set_title('')
axes.legend()
axes.grid(True, which='minor', axis='both')
axes.yaxis.grid()
self.clearLayout(self.composition_layout)
self.composition_layout.addWidget(self.composition_canvas)
self.composition_canvas.draw()
## Handles the deletion of a stage
def on_remove_stage(self):
if self.current_stage_comboBox.count() > 1:
# remove stage from stage combo box
# should generate currentSelected changed
index = self.current_stage_comboBox.currentIndex()
self.current_stage_comboBox.removeItem(index)
# eliminarle los polos y ceros
self.current_stage.clear()
# remove from list
if self.current_stage is not None:
self.currentApproximation.stages_2.remove(self.current_stage)
# rearrange ids
for i in range(0, len(self.currentApproximation.stages_2)):
self.currentApproximation.stages_2[i].change_id(i)
# update stage names in combobox
for i in range(0, self.current_stage_comboBox.count()):
self.current_stage_comboBox.setItemText(
i, self.currentApproximation.stages_2[i].label)
self.update_composition()
self.stage_canvas.draw()
self.composition_canvas.draw()
def on_preview_clicked(self):
index = self.approximationComboBox.currentIndex()
approximation = Approximation(
self,
self.template,
restriction=self.restriction,
min_order=self.minOrderSpinBox.value(),
max_order=self.maxOrderSpinBox.value(),
max_q=self.maxQdoubleSpinBox.value(),
custom_order=self.customOrderSpinBox.value(),
approx_type=self.approx_type)
left, right = self.template_axes.get_xlim()
left_N, right_N = self.template_axes_norm.get_xlim()
limits = {
'left': left,
'right': right,
'left_N': left_N,
'right_N': right_N
}
preview_lines = approximation.plot_preview_to_axes(
self.template_axes, self.template_axes_norm, limits)
# Add approx to combo box (LICHA)
self.current_approx_comboBox.addItem(approximation.legend)
self.approximations.append(approximation)
for line in preview_lines:
if line != None:
self.plotted_previews.append(line)
# show template_canvas
self.template_canvas.show()
# redraw template_canvas
self.template_canvas.draw()
self.preview_already_plotted = True
# self.initStages()
def on_clear_previews_clicked(self):
if self.preview_already_plotted:
for line in self.plotted_previews:
line.pop(0).remove()
self.template_canvas.draw()
self.plotted_previews = []
self.template_axes.get_legend().remove()
self.template_axes_norm.get_legend().remove()
self.template_canvas.draw()
self.preview_already_plotted = False
# redraw template to sclae properly
# remove all plots widgets. in plotLayout
self.clear_plot_layout()
# plot template in specified axes
self.template_axes = self.template_fig.add_subplot(211)
self.template_axes_norm = self.template_fig.add_subplot(212)
self.template.plot_template_in_axes(self.template_axes,
self.template_axes_norm)
# add template_canvas to plotLayout
self.plotsLayout.addWidget(self.template_canvas)
# show template_canvas
self.template_canvas.show()
# redraw template_canvas
self.template_canvas.draw()
# set template submitted to True
self.template_submited = True
self.approximations.clear()
# empty currentComboBox list
self.currentApproxComboBox.setCurrentIndex(0)
self.currentApproxComboBox.clear()
self.currentApproxComboBox.addItem("None")
self.currentApproxComboBox.setCurrentIndex(0)
# set current approx to None
self.currentApproximation = None
# validate approximation for GUI porpuses
self.validate_approximation()
self.currentApproxComboBox.update()
return
def on_compute_clicked(self):
# eliminar los plots de plotsLayout
compute_options = [
self.plot_attenuation, self.plot_phase, self.plot_group_delay,
self.plot_step_response, self.plot_s_plane, self.plot_freq_resp
]
count = 0
for opt in compute_options:
if opt:
count = count + 1
self.plots_axes = []
if self.plot_attenuation:
# if previously plotted, clear
if self.att_plotted:
self.att_axes.clear()
# create axes in figure
self.att_axes = self.att_fig.add_subplot(111)
for approximation in self.approximations:
left, right = approximation.plot_attenuation_to_axes(
self.att_axes)
t_left, t_right = self.template_axes.get_xlim()
if t_left > left:
left = t_left
if t_right < right:
right = t_right
self.att_axes.set_xlim(left, right)
self.att_axes.set_ylim(auto=True)
self.att_axes.grid(True, which='minor', axis='both')
self.att_axes.yaxis.grid()
self.att_plotted = True
self.att_canvas.draw()
self.att_canvas.show()
if self.plot_phase:
# if previously plotted, clear
if self.phase_plotted:
self.phase_axes.clear()
# create axes in figure
self.phase_axes = self.phase_fig.add_subplot(111)
left, right = self.template_axes.get_xlim()
limits = {'left': left, 'right': right}
for approximation in self.approximations:
p_left, p_right = approximation.plot_phase_to_axes(
self.phase_axes, limits)
if p_left > left:
left = p_left
if p_right < right:
right = p_right
self.phase_axes.set_xlim(left, right)
self.phase_axes.set_ylim(auto=True)
self.phase_axes.legend()
self.phase_axes.grid(True, which='minor', axis='both')
self.phase_axes.yaxis.grid()
self.phase_plotted = True
self.phase_canvas.draw()
self.phase_canvas.show()
if self.plot_group_delay:
# if previously plotted, clear
if self.group_delay_plotted:
self.group_axes.clear()
# create axes in figure
self.group_axes = self.group_fig.add_subplot(111)
left, right = self.template_axes.get_xlim()
limits = {'left': left, 'right': right}
for approximation in self.approximations:
p_left, p_right = approximation.plot_group_delay_to_axes(
self.group_axes, limits)
self.group_axes.set_ylim(auto=True)
self.group_axes.legend()
self.group_axes.grid(True, which='minor', axis='both')
self.group_axes.xaxis.grid()
self.group_axes.yaxis.grid()
self.group_delay_plotted = True
self.group_canvas.draw()
self.group_canvas.show()
if self.plot_step_response:
# if previously plotted, clear
if self.step_plotted:
self.step_axes.clear()
# create axes in figure
self.step_axes = self.step_fig.add_subplot(111)
left, right = self.template_axes.get_xlim()
limits = {'left': left, 'right': right}
for approximation in self.approximations:
approximation.plot_step_response_to_axes(self.step_axes)
self.step_axes.set_ylim(auto=True)
self.step_axes.legend()
self.step_axes.grid(True, which='minor', axis='both')
self.step_axes.xaxis.grid()
self.step_axes.yaxis.grid()
self.step_plotted = True
self.step_canvas.draw()
self.step_canvas.show()
if self.plot_s_plane:
# if previously plotted, clear
if self.s_plane_plotted:
self.s_plane_axes.clear()
# create axes in figure
self.s_plane_axes = self.s_plane_fig.add_subplot(
111, projection='polar')
left, right = self.template_axes.get_xlim()
limits = {'left': left, 'right': right}
for approximation in self.approximations:
approximation.plot_s_plane_to_axes(self.s_plane_axes)
self.s_plane_axes.set_ylim(auto=True)
self.s_plane_axes.legend()
self.s_plane_plotted = True
self.s_plane_canvas.draw()
self.s_plane_canvas.show()
if self.plot_freq_resp:
# if previously plotted, clear
if self.freq_response_plotted:
self.freq_axes.clear()
# create axes in figure
self.freq_axes = self.freq_fig.add_subplot(111)
left, right = self.template_axes.get_xlim()
limits = {'left': left, 'right': right}
for approximation in self.approximations:
p_left, p_right = approximation.plot_freq_response_to_axes(
self.freq_axes, limits)
if p_left > left:
left = p_left
if p_right < right:
right = p_right
self.freq_axes.set_xlim(left, right)
self.freq_axes.set_ylim(auto=True)
self.freq_axes.legend()
self.freq_axes.grid(True, which='minor', axis='both')
self.freq_axes.yaxis.grid()
self.freq_response_plotted = True
self.freq_canvas.draw()
self.freq_canvas.show()
return
def on_set_current_approx_clicked(self):
selectedLegend = str(self.currentApproxComboBox.currentText())
if selectedLegend == '':
return
if selectedLegend != "None":
for approximation in self.approximations:
if approximation.legend == selectedLegend:
selectedApproximation = approximation
self.setCurrentApproximation(selectedApproximation)
else:
self.setCurrentApproximation(None)
class groupBoxPar(QtWidgets.QGroupBox):
radioButtons = []
par = None
class stageRadioButton(QtWidgets.QRadioButton):
stage = None
def updateStages(self):
self.currentApproximation.updateStages()
def clearLayout(self, layout):
if layout.count() != 0:
for i in reversed(range(layout.count())):
tempWidget = layout.itemAt(i).widget()
if tempWidget is not None and str(
tempWidget.accessibleName()) != "scroll":
tempWidget.setParent(None)
return
def setCurrentApproximation(self, approximation):
self.clearLayout(self.horizontalLayout_30)
self.clearLayout(self.horizontalLayout_29)
self.clearLayout(self.paresGroupBoxLayout)
self.currentApproximation = approximation
if approximation is not None:
self.setStagesPushButton.show()
self.horizontalLayout_30.addWidget(
approximation.mainStageFigureCanvas)
approximation.plotToStagesTab()
for stage in approximation.stages:
self.horizontalLayout_29.addWidget(stage.figurecanvas)
stage.plotStage()
for pairList in [approximation.poles, approximation.zeros]:
for pair in pairList:
self.paresGroupBoxLayout.addWidget(pair.groupBox)
# currentItem=[self.currentApproxComboBox.itemText(count) for count in range(self.currentApproxComboBox.count())]
else:
self.setStagesPushButton.hide()
(opts, args) = parser.parse_args()
if not opts.s_template_file and not opts.t_template_file:
print "No templates specified at all. Please give a torrent and/or summary template."
parser.print_help()
sys.exit(1)
transmission = Transmission(options=opts)
torrents, summary = transmission.get_simple_torrent_data(active_only=opts.activeonly)
color_code = ColorCode(color_filename=opts.colorfile)
# Summary
if opts.s_template_file:
s_template = Template(opts.s_template_file)
s_template.set_data(summary)
s_info = s_template.get_string()
print s_info
# Torrents
if opts.t_template_file:
t_template = Template(opts.t_template_file, short_status=False)
if opts.limit > 0:
# Limit the number of displayed torrents
del torrents[opts.limit:]
for t in torrents:
t_template.set_data(t)
t_info = t_template.get_string()
def main():
addressees, theme, files, text_path = parse_config()
letter_template = Template(text_path, files, theme)
for addressee in addressees:
letter_template.send_to(addressee)
def run(videoFile,
template1,
advert1,
minmatch1,
ratio1,
template2=None,
advert2=None,
minmatch2=0,
ratio2=0,
outputFile=None,
show=True):
MAX_FRAMES = 100000000
frame_count = 0
start_from = 0
cap = cv2.VideoCapture(videoFile)
templates = []
template1 = Template(template1, advert1, minmatch1, ratio1)
templates.append(template1)
if template2 is not None:
template2 = Template(template2, advert2, minmatch2, ratio2)
templates.append(template2)
if outputFile is not None:
fourcc = cv2.VideoWriter_fourcc(*'MP4V')
out = cv2.VideoWriter(outputFile, fourcc, 30.0, (1280, 720))
while (1):
ret, frame = cap.read()
frame_count += 1
if ret == True:
if frame_count < start_from:
continue
# if frame_count % 2 == 0:
# continue
for template in templates:
frame = template.processFrame(frame, frame_count)
if outputFile is None:
if show is True:
cv2.imshow("img3", cv2.flip(frame, -1))
if cv2.waitKey(1) & 0xFF == ord('q'):
break
else:
out.write(cv2.flip(frame, -1))
if frame_count > MAX_FRAMES:
print("Exiting...")
break
else:
break
# Release everything if job is finished
cap.release()
if outputFile is not None:
out.release()
cv2.destroyAllWindows()
return frame_count
#!/usr/bin/env python
"""
Author: Manpreet Singh 2016
Headless mode for raspberry pi.
This program only returns the X and Y position of an object if it is found in the image
"""
import cv2 as cv
import numpy as np
from networktables import NetworkTable
from Template import Template
nt = NetworkTable.getTable("VISION")
template = Template()
cap = cv.VideoCapture(1)
while True:
_, im = cap.read()
im = np.array(im, dtype=np.uint8)
hsv = cv.cvtColor(im, cv.COLOR_BGR2HSV)
# HSV Ranges, hard coded values
lower_limit = np.array([78, 176, 0])
upper_limit = np.array([119, 255, 255])
mask = cv.inRange(hsv, lower_limit, upper_limit)
_, contours, hierarchy = cv.findContours(mask, cv.RETR_TREE,
cv.CHAIN_APPROX_SIMPLE)
def getPintuUrl(self, pintu):
t = Template(pintu.templNo)
t.setTitle(pintu.title)
t.setDescription(pintu.description)
for i in range(1, 6):
t.setShowbox(i, eval("pintu.showbox%d.cost" % i),
eval("pintu.showbox%d.sale" % i),
eval("pintu.showbox%d.name" % i),
eval("pintu.showbox%d.url" % i))
t.setPicbox(pintu.bigpic)
t.output()
return path.join("cache", "output.svg.png")
class Page(Container):
"""
Base widget for web pages. Typically an instance of this class (or
a class inheriting from it) is used as top level container to
which every other CTK widget is added.
Arguments:
template: custom CTK Template for the pages
headers: list of entries for the <head> section.
helps: parameters for CTK HelpMenu, if any.
Example:
page = CTK.Page ()
page += CTK.RawHTML ('<p>Nothing to see here.</p>')
return page.Render()
"""
def __init__(self, template=None, headers=None, helps=None, **kwargs):
Container.__init__(self, **kwargs)
self.js_header_end = True
if headers:
self._headers = HEADERS[:] + headers[:]
else:
self._headers = HEADERS[:]
if template:
self._template = template
else:
self._template = Template(content=PAGE_TEMPLATE_DEFAULT)
self._helps = []
for entry in helps or []:
self._helps.append(HelpEntry(entry[1], entry[0]))
def AddHeaders(self, headers):
if type(headers) == list:
self._headers += headers
else:
self._headers.append(headers)
def Render(self):
# Get the content render
render = Container.Render(self)
# Build the <head> text
self._headers += render.headers
if self.js_header_end:
head = "\n".join(
filter(lambda l: not '<script' in l, uniq(self._headers)))
else:
head = "\n".join(uniq(self._headers))
# Helps
all_helps = self._helps
all_helps += render.helps
render_helps = HelpMenu(all_helps).Render().html
# Javascript
js = ''
if self.js_header_end:
js += "\n".join(
filter(lambda l: '<script' in l, uniq(self._headers)))
if render.js:
js += formatter(HTML_JS_ON_READY_BLOCK, render.js)
# Build the <body>
body = render.html + render_helps
if render.js:
body += js
# Set up the template
self._template['head'] = head
self._template['html'] = render.html
self._template['js'] = js
self._template['body'] = body
self._template['helps'] = render_helps
if not self._template['body_props']:
self._template['body_props'] = ''
txt = self._template.Render()
return Postprocess(txt)
def getTemplates(self):
if self.debug:
print(self.seq)
result_handle = NCBIWWW.qblast("blastp",
"pdb",
str(self.seq),
expect=0.01)
blast_records = NCBIXML.parse(result_handle)
if self.debug:
print("BLAST Request Finished")
print()
for record in blast_records:
for alignment in record.alignments:
id = alignment.accession
fasta = self.getFastaFromId(id)
title = alignment.title
length = alignment.length
template = Template(id=id,
fasta=fasta,
sequence=title,
length=length,
alignments=[])
self.templates[id] = template
self.fastas[id] = fasta
for hsp in alignment.hsps:
a = Alignment(id=id,
title=title,
expect=hsp.expect,
score=hsp.score,
identities=hsp.identities,
similarity=(100 * hsp.identities /
len(self.seq)),
target=hsp.query,
targetstart=hsp.query_start,
match=hsp.match,
template=hsp.sbjct,
templatestart=hsp.sbjct_start,
length=length)
targetfront = str(self.seq[:a.targetstart - 1])
targetend = str(self.seq[(a.targetstart + a.length):])
a.target = ''.join(targetfront) + a.target + ''.join(
targetend)
a.length = len(a.target)
templatefront = ['-'] * (a.targetstart - 1)
templateend = ['-'] * (len(self.seq) -
(a.targetstart + a.length))
a.template = ''.join(templatefront) + a.template + ''.join(
templateend)
self.templates[id].alignments.append(a)
self.alignments.append(a)
for id, fasta in self.fastas.items():
fname = '%s/%s.fasta' % (self.fastasfolder, id)
if not os.path.exists(fname):
f = open(fname, 'w')
SeqIO.write(fasta, f, 'fasta')
f.close()
for i, a in enumerate(self.alignments):
fname = '%s/%s-%s.alignment' % (self.alignmentsfolder, a.id,
str(i))
if not os.path.exists(fname):
f = open(fname, 'w')
json.dump(a.toJSON(), f)
f.close()
return self.templates.keys()
def __init__(self, headers=[], **kwargs):
Container.__init__(self, **kwargs)
self.headers = headers[:]
self.template = Template(content=PAGE_TEMPLATE_MINI)
def list_comments(self, query, *args):
with Repository(db_file, table_name) as repository:
comments_tuple = repository.find_all()
comments = [Comment(item[0], item[1], item[2]) for item in comments_tuple]
return Template.render('comments.tpl', {"comments": comments})
class JaneP(object):
def __init__(self):
self.mth = datetime.now().month
self.sheetName = 'interface1'
self.path = ''
self.pres = Template()
# pres.getDataWithTemplateOrder(templateWorkSheet, self.repos)
#self.google_cres="E:/downloads/JaneProject-f472d80e0028.json"
self.google_cres = "E:/downloads/JaneProject-f472d80e0028.json"
self.google = False
self.fileName = 'entityConfig.xlsx'
#self.fileName='/Users/pengwang/Downloads/entityConfig.xlsx'
self.googleFile = 'entityConfig'
#self.outputFile='/Users/pengwang/Downloads/output.xlsx'
self.outputFile = 'output.xlsx'
def doProcess(self):
self.fileName = 'entityConfig.xlsx'
if (self.google):
self.io = GoogleExcel()
self.io.loadSheet(self.google_cres)
else:
self.io = MicroExcel()
self.io.loadSheet(self.path, self.fileName)
self.repos = self.io.repos
def createTemplate(self):
templateDFs = pd.DataFrame(
self.io.templates.values
) # convert worksheets to dataFrame structure
for i in range(1, len(templateDFs)): #loop all templates
path = templateDFs.iloc[i][0]
if (pd.isnull(path)):
fileName = self.path + templateDFs.iloc[i][1]
else:
fileName = path + templateDFs.iloc[i][1]
sheet = templateDFs.iloc[i][2]
#self.writeToSheet(fileName, sheet,outputData, template)
self.templateWorkSheet = self.io.loadTemplateWorkSheet(sheet)
self.outputData = self.pres.getDataWithTemplateOrder(
self.templateWorkSheet, self.repos)
self.io.writeToSheet(fileName, sheet, self.outputData,
self.templateWorkSheet)
# self.io.writeToSheet(self.outputFile, self.sheetName,self.outputData, self.templateWorkSheet)
def main(self, argv):
#if argv == []:
# print("Usage: " + sys.argv[0] + " -h for help")
#return
try:
# opts, args = getopt.getopt(argv,"hf:o:",["ifile=","ofile="])
opts, args = getopt.getopt(argv, "hgf:t:o:n", [
"help", "google Drive", "file=", "templateWorkSheet=",
"output=", "noTemplate"
])
except getopt.GetoptError:
print("Usage: " + sys.argv[0] + " -h for help")
#sys.exit(2)
for opt, arg in opts:
if opt == '-h':
print(
'Syntax: ' + sys.argv[0] +
' \n\n -h help.\n -g google Drive. cres Path and Name \n -f file path and name.\n -p presentation name.\n -o output path and file name.\n'
)
sys.exit()
elif opt in ("-g", "-google"):
self.google = True
self.google = True
#self.google_cres=arg
elif opt in ("-f", "-file"):
self.path = arg
elif opt in ("-t", "-template"):
self.sheetName = arg.lower()
elif opt in ("-o", "-output"):
self.outputName = arg
if opt in ("-n", "-noTemplate"):
self.doProcess()
else:
self.doProcess()
self.createTemplate()
def say(self, name = 'World'):
return Template.render('hello.tpl', {'name': name})
def say(self, name='World'):
return Template.render('hello.tpl', {'name': name})
def hello(self, query, *args):
return Template.render('hello.tpl', {"name": args[0]})
Gradebook Type Cohort Period ID
------------------------------------
Academic D 1 114
TEKS Mastery D 1 13
Academic C 2 113
TEKS Mastery C 2 12
Academic B 5 115
TEKS Mastery B 5 11
Academic A 6 6
"""
gradebook_choice = str(raw_input("What type of gradebook? "))
gradebook_id_choice = str(raw_input("What is the gradebook ID? "))
cohort_choice = str(raw_input("Which cohort? "))
top = Template(gradebook_choice, gradebook_id_choice, cohort_choice)
top.generate_gb_string()
file_string = gradebook_choice + cohort_choice + ".csv"
f = open(file_string, 'w')
f.write(top.print_header())
def create_assignment(assignment, assignment_id, due_date):
a = Assignment(assignment, assignment_id, due_date)
return a.print_assignment_subheader()
def create_event(event, event_id, skill, due_date):
e = Event(event, event_id, skill, due_date)
class Page (Container):
def __init__ (self, template=None, headers=None, helps=[], **kwargs):
Container.__init__ (self, **kwargs)
self.js_header_end = True
if headers:
self._headers = HEADERS + headers
else:
self._headers = HEADERS
if template:
self._template = template
else:
self._template = Template (content = PAGE_TEMPLATE_DEFAULT)
self._helps = []
for entry in helps:
self._helps.append (HelpEntry (entry[1], entry[0]))
def AddHeaders (self, headers):
if type(headers) == list:
self._headers += headers
else:
self._headers.append (headers)
def Render(self):
# Get the content render
render = Container.Render(self)
# Build the <head> text
self._headers += render.headers
if self.js_header_end:
head = "\n".join (filter (lambda l: not '<script' in l, uniq(self._headers)))
else:
head = "\n".join (uniq(self._headers))
# Helps
all_helps = self._helps
all_helps += render.helps
render_helps = HelpMenu(all_helps).Render().html
# Javascript
js = ''
if self.js_header_end:
js += "\n".join (filter (lambda l: '<script' in l, uniq(self._headers)))
if render.js:
js += formater (HTML_JS_ON_READY_BLOCK, render.js)
# Build the <body>
body = render.html + render_helps
if render.js:
body += js
# Set up the template
self._template['head'] = head
self._template['html'] = render.html
self._template['js'] = js
self._template['body'] = body
self._template['helps'] = render_helps
if not self._template['body_props']:
self._template['body_props'] = ''
txt = self._template.Render()
return Postprocess (txt)
def writeToSheet(self, outputFile, sheetName, outputData,
templateWorkSheet):
self.getSheet(outputFile)
sheet = self.workbook.create_sheet(title=sheetName)
#print head months
row = 1
col = 1
sheet.cell(row, col, ci.INDEX_NAME)
col = col + 1
for mon in ci.COLUMNS_WITHOUT_INDEXES:
end_col = col + 6
sheet.merge_cells(start_row=row,
start_column=col,
end_row=row,
end_column=end_col)
sheet.cell(1, col, mon)
col = end_col + 1
# print sub Head as A17,B18...
row = 2
col = 1
for column in outputData.columns.tolist():
sheet.cell(row, col, column)
col = col + 1
# a blank line
# print data
row = 4
templateClass = Template()
for templateRow in templateWorkSheet.iterrows():
d = outputData.query(ci.INDEX_NAME + "=='" +
templateRow[1][ci.CONFIG_ACCOUNT] + "'")
if (~d.empty and len(d) > 0):
# templateWorkSheet row is not percentages of other row
sheet.cell(row, 1, d.iloc[0][0])
for j in range(1, len(d.columns)):
col = j + 1
if (d.columns[j] in ci.INDEX_PERCENTAGES):
sheet.cell(row, col, "{:1.0%}".format(d.iloc[0][j]))
else:
sheet.cell(row, col, "{:,.0f}".format(d.iloc[0][j]))
else:
if (templateRow[1][ci.CONFIG_LEVEL] == 10):
percent = templateClass.getPercentages(
templateRow[1][ci.CONFIG_ACCOUNT],
templateRow[1][ci.CONFIG_PRECENTAGES],
templateRow[1][ci.CONFIG_DENOMINATOR], outputData)
sheet.cell(row, 1, percent.iloc[0][0])
for j in range(1, len(percent.columns)):
col = j + 1
#format to %
sheet.cell(row, col,
"{:1.0%}".format(percent.iloc[0][j]))
else:
sheet.cell(row, 1, templateRow[1][ci.CONFIG_ACCOUNT])
# if(templateRow[1][ci.CONFIG_LEVEL!='1']):
# rowA=sheet.row_dimensions[row]
# rowA.font=Font(b="border")
row = row + 1
#self.wb.save(self.fileName)
self.workbook.save(outputFile)
def render(template,**kwargs):
from Template import Template
t = Template(template,searchList=kwargs)
return t.respond()
def hello(self, query, *args):
return Template.render('hello.tpl', {"name": args[0]})
