def test_m( self ):
expression = Bio.Martel.Expression.AtEnd()
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "ab\n", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_s(self):
expression = Bio.Martel.Expression.Literal("Z")
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("Ye", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
def test_s( self ):
expression = Bio.Martel.Expression.Literal( "Z" )
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "Ye", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_q(self):
expression = Bio.Martel.Str("abcd")
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("Abcd", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
def test_c(self):
expression = Bio.Martel.Any("ace")
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("e", tagtable)[0]
return (self.assert_condition(success == 1, "Failed"))
def test_m(self):
expression = Bio.Martel.Expression.AtEnd()
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("ab\n", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
def test_q( self ):
expression = Bio.Martel.Str( "abcd" )
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "Abcd", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_c( self ):
expression = Bio.Martel.Any( "ace" )
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "e", tagtable )[ 0 ]
return ( self.assert_condition( success == 1, "Failed" ) )
def test_z2( self ):
exp = Bio.Martel.Expression.Literal( '9' )
expression = Bio.Martel.Seq( exp )
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "9", tagtable )[ 0 ]
return ( self.assert_condition( success == 1, "Failed" ) )
def test_y2( self ):
alt = Bio.Martel.Str( 'uvwx' )
expression = Bio.Martel.Alt( alt )
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "Uvwx", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_y2(self):
alt = Bio.Martel.Str('uvwx')
expression = Bio.Martel.Alt(alt)
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("Uvwx", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
def test_z2(self):
exp = Bio.Martel.Expression.Literal('9')
expression = Bio.Martel.Seq(exp)
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("9", tagtable)[0]
return (self.assert_condition(success == 1, "Failed"))
def test_w2(self):
exp1 = Bio.Martel.Any('GHIjk')
exp2 = Bio.Martel.Str('[]{}~')
expression = exp1 | exp2
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("[]{}", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
def test_k2(self):
exp1 = Bio.Martel.Any('GHIjk')
exp2 = Bio.Martel.Str(':) :)')
expression = exp1 + exp2
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("G:) :)", tagtable)[0]
return (self.assert_condition(success == 1, "Failed"))
def test_k2( self ):
exp1 = Bio.Martel.Any( 'GHIjk' )
exp2 = Bio.Martel.Str( ':) :)' )
expression = exp1 + exp2
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "G:) :)", tagtable )[ 0 ]
return ( self.assert_condition( success == 1, "Failed" ) )
def test_w2( self ):
exp1 = Bio.Martel.Any( 'GHIjk' )
exp2 = Bio.Martel.Str( '[]{}~' )
expression = exp1 | exp2
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "[]{}", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_a1( self ):
alt1 = Bio.Martel.Expression.Literal( 'K' )
alt2 = Bio.Martel.Str( 'VWX' )
alt3 = Bio.Martel.Any( 'lmn' )
expression = Bio.Martel.Alt( alt1, alt2, alt3 )
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "UVWX", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_t2(self):
exp1 = Bio.Martel.Expression.Literal('P')
exp2 = Bio.Martel.Any('gHiJk')
exp3 = Bio.Martel.Str('.<>,;')
expression = exp1 | exp2 | exp3
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("j", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
def test_p2(self):
exp1 = Bio.Martel.Str('$%@#/\\')
exp2 = Bio.Martel.Any('GHIjk')
exp3 = Bio.Martel.Str('(*+_-=')
expression = exp1 + exp2 + exp3
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("$%@#/\\I*+-_=", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
def test_j2(self):
exp1 = Bio.Martel.Expression.Literal('P')
exp2 = Bio.Martel.Any('ghijk')
exp3 = Bio.Martel.Str('!!!!!')
expression = exp1 + exp2 + exp3
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("Pk!!!!!", tagtable)[0]
return (self.assert_condition(success == 1, "Failed"))
def test_j2( self ):
exp1 = Bio.Martel.Expression.Literal( 'P' )
exp2 = Bio.Martel.Any( 'ghijk' )
exp3 = Bio.Martel.Str( '!!!!!' )
expression = exp1 + exp2 + exp3
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "Pk!!!!!", tagtable )[ 0 ]
return ( self.assert_condition( success == 1, "Failed" ) )
def test_p2( self ):
exp1 = Bio.Martel.Str( '$%@#/\\' )
exp2 = Bio.Martel.Any( 'GHIjk' )
exp3 = Bio.Martel.Str( '(*+_-=' )
expression = exp1 + exp2 + exp3
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "$%@#/\\I*+-_=", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_g1(self):
exp1 = Bio.Martel.Expression.Literal('K')
exp2 = Bio.Martel.Str('VWX')
exp3 = Bio.Martel.Any('lmn')
expression = Bio.Martel.Seq(exp1, exp2, exp3)
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("KmVWX", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
def test_t2( self ):
exp1 = Bio.Martel.Expression.Literal( 'P' )
exp2 = Bio.Martel.Any( 'gHiJk' )
exp3 = Bio.Martel.Str( '.<>,;' )
expression = exp1 | exp2 | exp3
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "j", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_g1( self ):
exp1 = Bio.Martel.Expression.Literal( 'K' )
exp2 = Bio.Martel.Str( 'VWX' )
exp3 = Bio.Martel.Any( 'lmn' )
expression = Bio.Martel.Seq( exp1, exp2, exp3 )
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "KmVWX", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_a1(self):
alt1 = Bio.Martel.Expression.Literal('K')
alt2 = Bio.Martel.Str('VWX')
alt3 = Bio.Martel.Any('lmn')
expression = Bio.Martel.Alt(alt1, alt2, alt3)
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("UVWX", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
def test_z1( self ):
exp1 = Bio.Martel.Str( 'Az' )
exp2 = Bio.Martel.Expression.Literal( 'K' )
exp3 = Bio.Martel.MaxRepeat( exp1, 0, 0 )
expression = Bio.Martel.Seq( exp3, exp2 )
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "AzK", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_z1(self):
exp1 = Bio.Martel.Str('Az')
exp2 = Bio.Martel.Expression.Literal('K')
exp3 = Bio.Martel.MaxRepeat(exp1, 0, 0)
expression = Bio.Martel.Seq(exp3, exp2)
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("AzK", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
def test_f2(self):
exp1 = Bio.Martel.Expression.Literal('t')
exp2 = Bio.Martel.Str('ij')
exp3 = Bio.Martel.Seq(exp1, exp2)
exp4 = Bio.Martel.Expression.Assert(exp3, 3)
exp5 = Bio.Martel.Str('ti')
expression = Bio.Martel.Seq(exp4, exp5)
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("tij", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
def test_f2( self ):
exp1 = Bio.Martel.Expression.Literal( 't' )
exp2 = Bio.Martel.Str( 'ij' )
exp3 = Bio.Martel.Seq( exp1, exp2 )
exp4 = Bio.Martel.Expression.Assert( exp3, 3 )
exp5 = Bio.Martel.Str( 'ti' )
expression = Bio.Martel.Seq( exp4, exp5 )
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "tij", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_h2(self):
exp1 = Bio.Martel.Expression.Literal('t')
exp2 = Bio.Martel.Str('pQrsT')
exp3 = Bio.Martel.Seq(exp1, exp2)
exp4 = Bio.Martel.Group('item', exp3)
exp5 = Bio.Martel.Str('ab')
expression = Bio.Martel.Seq( exp4, exp5, \
Bio.Martel.Expression.GroupRef( 'item' ) )
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("tpQrsTabtPqRSt", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
def test_h2( self ):
exp1 = Bio.Martel.Expression.Literal( 't' )
exp2 = Bio.Martel.Str( 'pQrsT' )
exp3 = Bio.Martel.Seq( exp1, exp2 )
exp4 = Bio.Martel.Group( 'item', exp3 )
exp5 = Bio.Martel.Str( 'ab' )
expression = Bio.Martel.Seq( exp4, exp5, \
Bio.Martel.Expression.GroupRef( 'item' ) )
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "tpQrsTabtPqRSt", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_i2( self ):
exp1 = Bio.Martel.Expression.Literal( 't' )
exp2 = Bio.Martel.Expression.Literal( 'T' )
exp3 = Bio.Martel.Alt( exp1, exp2 )
exp4 = Bio.Martel.Str( '01234' )
exp5 = Bio.Martel.Seq( exp3, exp4 )
exp6 = Bio.Martel.Group( 'item', exp5 )
exp7 = Bio.Martel.Str( '56789' )
exp8 = Bio.Martel.Expression.GroupRef( 'item' )
expression = Bio.Martel.Seq( exp6, exp7, exp8, exp7, exp8, exp7 )
print expression
tagtable, want_flg = Bio.Martel.Generate.generate( expression )
success = tag( "t0123456789T0123456789t0123456789", tagtable )[ 0 ]
return ( self.assert_condition( success == 0, "Failed" ) )
def test_i2(self):
exp1 = Bio.Martel.Expression.Literal('t')
exp2 = Bio.Martel.Expression.Literal('T')
exp3 = Bio.Martel.Alt(exp1, exp2)
exp4 = Bio.Martel.Str('01234')
exp5 = Bio.Martel.Seq(exp3, exp4)
exp6 = Bio.Martel.Group('item', exp5)
exp7 = Bio.Martel.Str('56789')
exp8 = Bio.Martel.Expression.GroupRef('item')
expression = Bio.Martel.Seq(exp6, exp7, exp8, exp7, exp8, exp7)
print expression
tagtable, want_flg = Bio.Martel.Generate.generate(expression)
success = tag("t0123456789T0123456789t0123456789", tagtable)[0]
return (self.assert_condition(success == 0, "Failed"))
