def main():
print('Cmd: %s' % ' '.join(sys.argv))
op = CmnCmdOpts.argParserIn(
desc='Searches for structures that look like RP66v1 EFLRs',
prog='%(prog) ',
version=__version__,
)
op.add_argument(
"-s",
"--show-tell",
action="store_true",
dest="show_tell",
default=False,
help="Show file locations and lengths. Default: %(default)s.")
# op.add_argument("-n", "--number", dest="min_run_length",
# type=int, default=DEFAULT_MIN_RUN_LENGTH,
# help="Size of the minimum run length. Default: %(default)s.")
op.add_argument('infile',
type=argparse.FileType('rb'),
help='The file to search')
args = op.parse_args()
clkStart = time.clock()
timStart = time.time()
# Initialise logging etc.
#logging.basicConfig(level=args.loglevel,
# format='%(asctime)s %(levelname)-8s %(message)s',
#datefmt='%y-%m-%d % %H:%M:%S',
# stream=sys.stdout)
# Your code here
myObj = ScanV1EFLR(args.infile)
print(' CPU time = %8.3f (S)' % (time.clock() - clkStart))
print('Exec. time = %8.3f (S)' % (time.time() - timStart))
print('Bye, bye!')
return 0
def test_20(self):
"""TestCmnCmdOpts.test_12(): basic use of CmnCmdOpts.argParserIn()."""
myP = CmnCmdOpts.argParserIn("Description", "Program", "Version")
myNs = myP.parse_args(['IN',])
self.assertEqual('IN', myNs.pathIn)
self.assertFalse(myNs.recursive)
self.assertTrue(myNs.glob is None)