예제 #1
0
    GromosCluster_0.inputPorts[3].configure(datatype='string')
    ## configure MacroNode input ports
    GromosCluster_0.outputPorts[0].configure(name='DownloadSaveDir_output')
    GromosCluster_0.outputPorts[0].configure(datatype='string')
    ## configure MacroNode output ports
    GromosCluster_0.shrink()
    apply(GromosCluster_0.configure, (), {'paramPanelImmediate': 1, 'expanded': False})
except:
    print "WARNING: failed to restore GromosCluster named GromosCluster in network masterNet"
    print_exc()
    GromosCluster_0=None

try:
    ## saving node TrajectoryPDBFile ##
    from Vision.StandardNodes import FileBrowserNE
    TrajectoryPDBFile_7 = FileBrowserNE(constrkw={}, name='TrajectoryPDBFile', library=stdlib)
    masterNet.addNode(TrajectoryPDBFile_7,88,47)
    TrajectoryPDBFile_7.inputPortByName['filename'].widget.set(r"GROMOSClustering_0.1_input/trajectory.pdb", run=False)
    apply(TrajectoryPDBFile_7.configure, (), {'paramPanelImmediate': 1})
except:
    print "WARNING: failed to restore FileBrowserNE named TrajectoryPDBFile in network masterNet"
    print_exc()
    TrajectoryPDBFile_7=None

try:
    ## saving node ActiveResidueFile ##
    from Vision.StandardNodes import FileBrowserNE
    ActiveResidueFile_8 = FileBrowserNE(constrkw={}, name='ActiveResidueFile', library=stdlib)
    masterNet.addNode(ActiveResidueFile_8,412,46)
    ActiveResidueFile_8.inputPortByName['filename'].widget.set(r"GROMOSClustering_0.1_input/activeSiteResidue.pdb", run=False)
    apply(ActiveResidueFile_8.configure, (), {'paramPanelImmediate': 1})
예제 #2
0
파일: AD3Dpf.py 프로젝트: lisarosalina/App
    def afterAddingToNetwork(self):
        from NetworkEditor.macros import MacroNode
        MacroNode.afterAddingToNetwork(self)
        ## loading libraries ##
        from AutoDockTools.VisionInterface.AdtNodes import adtlib
        from MolKit.VisionInterface.MolKitNodes import molkitlib
        from Vision.StandardNodes import stdlib
        ## building macro network ##
        AD3Dpf_6 = self
        from traceback import print_exc

        ## loading libraries ##
        from AutoDockTools.VisionInterface.AdtNodes import adtlib
        self.macroNetwork.getEditor().addLibraryInstance(
            adtlib, "AutoDockTools.VisionInterface.AdtNodes", "adtlib")

        from MolKit.VisionInterface.MolKitNodes import molkitlib
        self.macroNetwork.getEditor().addLibraryInstance(
            molkitlib, "MolKit.VisionInterface.MolKitNodes", "molkitlib")

        from Vision.StandardNodes import stdlib
        self.macroNetwork.getEditor().addLibraryInstance(
            stdlib, "Vision.StandardNodes", "stdlib")

        try:
            ## saving node input Ports ##
            input_Ports_7 = self.macroNetwork.ipNode
            input_Ports_7.move(158, 4)
        except:
            print "WARNING: failed to restore MacroInputNode named input Ports in network self.macroNetwork"
            print_exc()
            input_Ports_7 = None

        try:
            ## saving node output Ports ##
            output_Ports_8 = self.macroNetwork.opNode
            output_Ports_8.move(172, 322)
        except:
            print "WARNING: failed to restore MacroOutputNode named output Ports in network self.macroNetwork"
            print_exc()
            output_Ports_8 = None

        try:
            ## saving node Docking Parameter File Browser ##
            from AutoDockTools.VisionInterface.AdtNodes import DockingParameterFileBrowserNE
            Docking_Parameter_File_Browser_9 = DockingParameterFileBrowserNE(
                constrkw={},
                name='Docking Parameter File Browser',
                library=adtlib)
            self.macroNetwork.addNode(Docking_Parameter_File_Browser_9, 204,
                                      93)
            apply(
                Docking_Parameter_File_Browser_9.inputPortByName['filename'].
                configure, (), {
                    'color': 'white',
                    'cast': True,
                    'shape': 'oval'
                })
            apply(
                Docking_Parameter_File_Browser_9.outputPortByName['filename'].
                configure, (), {
                    'color': 'white',
                    'shape': 'oval'
                })
            Docking_Parameter_File_Browser_9.inputPortByName[
                'filename'].widget.set("/mgl/work4/rhuey/dev23/NEWTEST.dpf",
                                       run=False)
        except:
            print "WARNING: failed to restore DockingParameterFileBrowserNE named Docking Parameter File Browser in network self.macroNetwork"
            print_exc()
            Docking_Parameter_File_Browser_9 = None

        try:
            ## saving node Prepare AD3Dpf ##
            from AutoDockTools.VisionInterface.AdtNodes import AdtPrepareDpf3
            Prepare_AD3Dpf_10 = AdtPrepareDpf3(constrkw={},
                                               name='Prepare AD3Dpf',
                                               library=adtlib)
            self.macroNetwork.addNode(Prepare_AD3Dpf_10, 170, 266)
            apply(
                Prepare_AD3Dpf_10.inputPortByName['ligand_filename'].configure,
                (), {
                    'color': 'white',
                    'cast': True,
                    'shape': 'oval'
                })
            apply(
                Prepare_AD3Dpf_10.inputPortByName['receptor_filename'].
                configure, (), {
                    'color': 'white',
                    'cast': True,
                    'shape': 'oval'
                })
            apply(Prepare_AD3Dpf_10.inputPortByName['dpf_filename'].configure,
                  (), {
                      'color': 'white',
                      'cast': True,
                      'shape': 'oval'
                  })
            apply(Prepare_AD3Dpf_10.inputPortByName['parameters'].configure,
                  (), {
                      'color': 'cyan',
                      'cast': True,
                      'shape': 'oval'
                  })
            apply(
                Prepare_AD3Dpf_10.inputPortByName['outputfilename'].configure,
                (), {
                    'color': 'white',
                    'cast': True,
                    'shape': 'oval'
                })
            apply(
                Prepare_AD3Dpf_10.outputPortByName['ad3_parameter_file'].
                configure, (), {
                    'color': 'white',
                    'shape': 'oval'
                })
        except:
            print "WARNING: failed to restore AdtPrepareDpf3 named Prepare AD3Dpf in network self.macroNetwork"
            print_exc()
            Prepare_AD3Dpf_10 = None

        try:
            ## saving node Read Molecule ##
            from MolKit.VisionInterface.MolKitNodes import ReadMolecule
            Read_Molecule_11 = ReadMolecule(constrkw={},
                                            name='Read Molecule',
                                            library=molkitlib)
            self.macroNetwork.addNode(Read_Molecule_11, 94, 51)
            apply(Read_Molecule_11.inputPortByName['filename'].configure, (), {
                'color': 'white',
                'cast': True,
                'shape': 'oval'
            })
            apply(Read_Molecule_11.outputPortByName['MolSets'].configure, (), {
                'color': '#c64e70',
                'shape': 'oval'
            })
        except:
            print "WARNING: failed to restore ReadMolecule named Read Molecule in network self.macroNetwork"
            print_exc()
            Read_Molecule_11 = None

        try:
            ## saving node Read Molecule ##
            from MolKit.VisionInterface.MolKitNodes import ReadMolecule
            Read_Molecule_12 = ReadMolecule(constrkw={},
                                            name='Read Molecule',
                                            library=molkitlib)
            self.macroNetwork.addNode(Read_Molecule_12, 187, 47)
            apply(Read_Molecule_12.inputPortByName['filename'].configure, (), {
                'color': 'white',
                'cast': True,
                'shape': 'oval'
            })
            apply(Read_Molecule_12.outputPortByName['MolSets'].configure, (), {
                'color': '#c64e70',
                'shape': 'oval'
            })
        except:
            print "WARNING: failed to restore ReadMolecule named Read Molecule in network self.macroNetwork"
            print_exc()
            Read_Molecule_12 = None

        try:
            ## saving node File Browser ##
            from Vision.StandardNodes import FileBrowserNE
            File_Browser_13 = FileBrowserNE(constrkw={},
                                            name='File Browser',
                                            library=stdlib)
            self.macroNetwork.addNode(File_Browser_13, 286, 143)
            apply(File_Browser_13.inputPortByName['filename'].configure, (), {
                'color': 'white',
                'cast': True,
                'shape': 'oval'
            })
            apply(File_Browser_13.outputPortByName['filename'].configure, (), {
                'color': 'white',
                'shape': 'oval'
            })
        except:
            print "WARNING: failed to restore FileBrowserNE named File Browser in network self.macroNetwork"
            print_exc()
            File_Browser_13 = None

        self.macroNetwork.freeze()

        ## saving connections for network AD3Dpf ##
        if Docking_Parameter_File_Browser_9 is not None and Prepare_AD3Dpf_10 is not None:
            try:
                self.macroNetwork.connectNodes(
                    Docking_Parameter_File_Browser_9,
                    Prepare_AD3Dpf_10,
                    "filename",
                    "dpf_filename",
                    blocking=True)
            except:
                print "WARNING: failed to restore connection between Docking_Parameter_File_Browser_9 and Prepare_AD3Dpf_10 in network self.macroNetwork"
        if Read_Molecule_11 is not None and Prepare_AD3Dpf_10 is not None:
            try:
                self.macroNetwork.connectNodes(Read_Molecule_11,
                                               Prepare_AD3Dpf_10,
                                               "MolSets",
                                               "ligand_filename",
                                               blocking=True)
            except:
                print "WARNING: failed to restore connection between Read_Molecule_11 and Prepare_AD3Dpf_10 in network self.macroNetwork"
        if Read_Molecule_12 is not None and Prepare_AD3Dpf_10 is not None:
            try:
                self.macroNetwork.connectNodes(Read_Molecule_12,
                                               Prepare_AD3Dpf_10,
                                               "MolSets",
                                               "receptor_filename",
                                               blocking=True)
            except:
                print "WARNING: failed to restore connection between Read_Molecule_12 and Prepare_AD3Dpf_10 in network self.macroNetwork"
        if File_Browser_13 is not None and Prepare_AD3Dpf_10 is not None:
            try:
                self.macroNetwork.connectNodes(File_Browser_13,
                                               Prepare_AD3Dpf_10,
                                               "filename",
                                               "outputfilename",
                                               blocking=True)
            except:
                print "WARNING: failed to restore connection between File_Browser_13 and Prepare_AD3Dpf_10 in network self.macroNetwork"
        output_Ports_8 = self.macroNetwork.opNode
        if Prepare_AD3Dpf_10 is not None and output_Ports_8 is not None:
            try:
                self.macroNetwork.connectNodes(Prepare_AD3Dpf_10,
                                               output_Ports_8,
                                               "ad3_parameter_file",
                                               "new",
                                               blocking=True)
            except:
                print "WARNING: failed to restore connection between Prepare_AD3Dpf_10 and output_Ports_8 in network self.macroNetwork"
        self.macroNetwork.unfreeze()

        AD3Dpf_6.shrink()

        ## reset modifications ##
        AD3Dpf_6.resetTags()
        AD3Dpf_6.buildOriginalList()
예제 #3
0
파일: AD3Gpf.py 프로젝트: lisarosalina/App
    def afterAddingToNetwork(self):
        from NetworkEditor.macros import MacroNode
        MacroNode.afterAddingToNetwork(self)
        ## loading libraries ##
        from AutoDockTools.VisionInterface.AdtNodes import adtlib
        from MolKit.VisionInterface.MolKitNodes import molkitlib
        from Vision.StandardNodes import stdlib
        ## building macro network ##
        AD3Gpf_15 = self
        from traceback import print_exc

        ## loading libraries ##
        from AutoDockTools.VisionInterface.AdtNodes import adtlib
        self.macroNetwork.getEditor().addLibraryInstance(
            adtlib, "AutoDockTools.VisionInterface.AdtNodes", "adtlib")

        from MolKit.VisionInterface.MolKitNodes import molkitlib
        self.macroNetwork.getEditor().addLibraryInstance(
            molkitlib, "MolKit.VisionInterface.MolKitNodes", "molkitlib")

        from Vision.StandardNodes import stdlib
        self.macroNetwork.getEditor().addLibraryInstance(
            stdlib, "Vision.StandardNodes", "stdlib")

        try:
            ## saving node input Ports ##
            input_Ports_16 = self.macroNetwork.ipNode
        except:
            print "WARNING: failed to restore MacroInputNode named input Ports in network self.macroNetwork"
            print_exc()
            input_Ports_16 = None

        try:
            ## saving node output Ports ##
            output_Ports_17 = self.macroNetwork.opNode
        except:
            print "WARNING: failed to restore MacroOutputNode named output Ports in network self.macroNetwork"
            print_exc()
            output_Ports_17 = None

        try:
            ## saving node Grid Parameter File Browser ##
            from AutoDockTools.VisionInterface.AdtNodes import GridParameterFileBrowserNE
            Grid_Parameter_File_Browser_18 = GridParameterFileBrowserNE(
                constrkw={},
                name='Grid Parameter File Browser',
                library=adtlib)
            self.macroNetwork.addNode(Grid_Parameter_File_Browser_18, 310, 99)
            apply(
                Grid_Parameter_File_Browser_18.inputPortByName['filename'].
                configure, (), {
                    'color': 'white',
                    'cast': True,
                    'shape': 'oval'
                })
            apply(
                Grid_Parameter_File_Browser_18.outputPortByName['filename'].
                configure, (), {
                    'color': 'white',
                    'shape': 'oval'
                })
            Grid_Parameter_File_Browser_18.inputPortByName[
                'filename'].widget.set("/mgl/work4/rhuey/dev23/fri2.gpf",
                                       run=False)
        except:
            print "WARNING: failed to restore GridParameterFileBrowserNE named Grid Parameter File Browser in network self.macroNetwork"
            print_exc()
            Grid_Parameter_File_Browser_18 = None

        try:
            ## saving node Read Molecule ##
            from MolKit.VisionInterface.MolKitNodes import ReadMolecule
            Read_Molecule_19 = ReadMolecule(constrkw={},
                                            name='Read Molecule',
                                            library=molkitlib)
            self.macroNetwork.addNode(Read_Molecule_19, 156, 96)
            apply(Read_Molecule_19.inputPortByName['filename'].configure, (), {
                'color': 'white',
                'cast': True,
                'shape': 'oval'
            })
            apply(Read_Molecule_19.outputPortByName['MolSets'].configure, (), {
                'color': '#c64e70',
                'shape': 'oval'
            })
        except:
            print "WARNING: failed to restore ReadMolecule named Read Molecule in network self.macroNetwork"
            print_exc()
            Read_Molecule_19 = None

        try:
            ## saving node Read Molecule ##
            from MolKit.VisionInterface.MolKitNodes import ReadMolecule
            Read_Molecule_20 = ReadMolecule(constrkw={},
                                            name='Read Molecule',
                                            library=molkitlib)
            self.macroNetwork.addNode(Read_Molecule_20, 234, 98)
            apply(Read_Molecule_20.inputPortByName['filename'].configure, (), {
                'color': 'white',
                'cast': True,
                'shape': 'oval'
            })
            apply(Read_Molecule_20.outputPortByName['MolSets'].configure, (), {
                'color': '#c64e70',
                'shape': 'oval'
            })
        except:
            print "WARNING: failed to restore ReadMolecule named Read Molecule in network self.macroNetwork"
            print_exc()
            Read_Molecule_20 = None

        try:
            ## saving node File Browser ##
            from Vision.StandardNodes import FileBrowserNE
            File_Browser_21 = FileBrowserNE(constrkw={},
                                            name='File Browser',
                                            library=stdlib)
            self.macroNetwork.addNode(File_Browser_21, 332, 163)
            apply(File_Browser_21.inputPortByName['filename'].configure, (), {
                'color': 'white',
                'cast': True,
                'shape': 'oval'
            })
            apply(File_Browser_21.outputPortByName['filename'].configure, (), {
                'color': 'white',
                'shape': 'oval'
            })
        except:
            print "WARNING: failed to restore FileBrowserNE named File Browser in network self.macroNetwork"
            print_exc()
            File_Browser_21 = None

        try:
            ## saving node Prepare AD3Gpf ##
            from AutoDockTools.VisionInterface.AdtNodes import AdtPrepareGpf3
            Prepare_AD3Gpf_22 = AdtPrepareGpf3(constrkw={},
                                               name='Prepare AD3Gpf',
                                               library=adtlib)
            self.macroNetwork.addNode(Prepare_AD3Gpf_22, 217, 216)
            apply(
                Prepare_AD3Gpf_22.inputPortByName['ligand_filename'].configure,
                (), {
                    'color': 'white',
                    'cast': True,
                    'shape': 'oval'
                })
            apply(
                Prepare_AD3Gpf_22.inputPortByName['receptor_filename'].
                configure, (), {
                    'color': 'white',
                    'cast': True,
                    'shape': 'oval'
                })
            apply(Prepare_AD3Gpf_22.inputPortByName['gpf_filename'].configure,
                  (), {
                      'color': 'white',
                      'cast': True,
                      'shape': 'oval'
                  })
            apply(Prepare_AD3Gpf_22.inputPortByName['parameters'].configure,
                  (), {
                      'color': 'cyan',
                      'cast': True,
                      'shape': 'oval'
                  })
            apply(
                Prepare_AD3Gpf_22.inputPortByName['outputfilename'].configure,
                (), {
                    'color': 'white',
                    'cast': True,
                    'shape': 'oval'
                })
            apply(
                Prepare_AD3Gpf_22.outputPortByName['ag3_parameter_file'].
                configure, (), {
                    'color': 'white',
                    'shape': 'oval'
                })
        except:
            print "WARNING: failed to restore AdtPrepareGpf3 named Prepare AD3Gpf in network self.macroNetwork"
            print_exc()
            Prepare_AD3Gpf_22 = None

        self.macroNetwork.freeze()

        ## saving connections for network AD3Gpf ##
        if Read_Molecule_19 is not None and Prepare_AD3Gpf_22 is not None:
            try:
                self.macroNetwork.connectNodes(Read_Molecule_19,
                                               Prepare_AD3Gpf_22,
                                               "MolSets",
                                               "ligand_filename",
                                               blocking=True)
            except:
                print "WARNING: failed to restore connection between Read_Molecule_19 and Prepare_AD3Gpf_22 in network self.macroNetwork"
        if Read_Molecule_20 is not None and Prepare_AD3Gpf_22 is not None:
            try:
                self.macroNetwork.connectNodes(Read_Molecule_20,
                                               Prepare_AD3Gpf_22,
                                               "MolSets",
                                               "receptor_filename",
                                               blocking=True)
            except:
                print "WARNING: failed to restore connection between Read_Molecule_20 and Prepare_AD3Gpf_22 in network self.macroNetwork"
        if Grid_Parameter_File_Browser_18 is not None and Prepare_AD3Gpf_22 is not None:
            try:
                self.macroNetwork.connectNodes(Grid_Parameter_File_Browser_18,
                                               Prepare_AD3Gpf_22,
                                               "filename",
                                               "gpf_filename",
                                               blocking=True)
            except:
                print "WARNING: failed to restore connection between Grid_Parameter_File_Browser_18 and Prepare_AD3Gpf_22 in network self.macroNetwork"
        if File_Browser_21 is not None and Prepare_AD3Gpf_22 is not None:
            try:
                self.macroNetwork.connectNodes(File_Browser_21,
                                               Prepare_AD3Gpf_22,
                                               "filename",
                                               "outputfilename",
                                               blocking=True)
            except:
                print "WARNING: failed to restore connection between File_Browser_21 and Prepare_AD3Gpf_22 in network self.macroNetwork"
        output_Ports_17 = self.macroNetwork.opNode
        if Prepare_AD3Gpf_22 is not None and output_Ports_17 is not None:
            try:
                self.macroNetwork.connectNodes(Prepare_AD3Gpf_22,
                                               output_Ports_17,
                                               "ag3_parameter_file",
                                               "new",
                                               blocking=True)
            except:
                print "WARNING: failed to restore connection between Prepare_AD3Gpf_22 and output_Ports_17 in network self.macroNetwork"
        self.macroNetwork.unfreeze()

        AD3Gpf_15.shrink()

        ## reset modifications ##
        AD3Gpf_15.resetTags()
        AD3Gpf_15.buildOriginalList()
예제 #4
0
    AutodockOpalService_kryptonite_nbcr_net_0.inputPortByName[
        'execPath'].widget.set(r"", run=False)
    apply(AutodockOpalService_kryptonite_nbcr_net_0.configure, (), {
        'paramPanelImmediate': 1,
        'expanded': False
    })
except:
    print "WARNING: failed to restore FunctionNode named AutodockOpalService_kryptonite_nbcr_net in network masterNet"
    print_exc()
    AutodockOpalService_kryptonite_nbcr_net_0 = None

try:
    ## saving node Ligand File Browser ##
    from Vision.StandardNodes import FileBrowserNE
    Ligand_File_Browser_1 = FileBrowserNE(constrkw={},
                                          name='Ligand File Browser',
                                          library=stdlib)
    masterNet.addNode(Ligand_File_Browser_1, 191, 22)
    Ligand_File_Browser_1.inputPortByName['filename'].widget.set(
        r"AutoDockSL_0.1_input/diversity0001.pdbqt", run=False)
    apply(Ligand_File_Browser_1.configure, (), {'paramPanelImmediate': 1})
except:
    print "WARNING: failed to restore FileBrowserNE named Ligand File Browser in network masterNet"
    print_exc()
    Ligand_File_Browser_1 = None

try:
    ## saving node DLG output name ##
    from Vision.StandardNodes import EntryNE
    DLG_output_name_2 = EntryNE(constrkw={},
                                name='DLG output name',
예제 #5
0
    wslib, "WebServices.VisionInterface.WSNodes", "wslib")

masterNet.getEditor().addLibraryInstance(stdlib, "Vision.StandardNodes",
                                         "stdlib")

from WebServices.VisionInterface.WSNodes import addOpalServerAsCategory
try:
    addOpalServerAsCategory("http://oolitevm.calit2.optiputer.net/opal2",
                            replace=False)
except:
    pass
try:
    ## saving node FileWithCommandOrdering ##
    from Vision.StandardNodes import FileBrowserNE
    FileWithCommandOrdering_0 = FileBrowserNE(constrkw={},
                                              name='FileWithCommandOrdering',
                                              library=stdlib)
    masterNet.addNode(FileWithCommandOrdering_0, 30, 10)
    FileWithCommandOrdering_0.inputPortByName['filename'].widget.set(
        r"NAMDTeragridGPU_0.1_input/order.txt", run=False)
    apply(FileWithCommandOrdering_0.configure, (), {'paramPanelImmediate': 1})
except:
    print "WARNING: failed to restore FileBrowserNE named FileWithCommandOrdering in network masterNet"
    print_exc()
    FileWithCommandOrdering_0 = None

try:
    ## saving node GetOrdering ##
    from Vision.StandardNodes import Generic
    GetOrdering_1 = Generic(constrkw={}, name='GetOrdering', library=stdlib)
    masterNet.addNode(GetOrdering_1, 30, 107)
예제 #6
0
try:
    ## saving node Output Directory Browser ##
    from Vision.StandardNodes import DirBrowserNE
    Output_Directory_Browser_2 = DirBrowserNE(constrkw={}, name='Output Directory Browser', library=stdlib)
    masterNet.addNode(Output_Directory_Browser_2,715,9)
    Output_Directory_Browser_2.inputPortByName['directory'].widget.set(r"AMDNBCR_0.2_output", run=False)
    apply(Output_Directory_Browser_2.configure, (), {'paramPanelImmediate': 1})
except:
    print "WARNING: failed to restore DirBrowserNE named Output Directory Browser in network masterNet"
    print_exc()
    Output_Directory_Browser_2=None

try:
    ## saving node Config File Browser ##
    from Vision.StandardNodes import FileBrowserNE
    Config_File_Browser_3 = FileBrowserNE(constrkw={}, name='Config File Browser', library=stdlib)
    masterNet.addNode(Config_File_Browser_3,67,22)
    Config_File_Browser_3.inputPortByName['filename'].widget.set(r"AMDNBCR_0.2_input/sample-aMD.conf", run=False)
    apply(Config_File_Browser_3.configure, (), {'paramPanelImmediate': 1})
except:
    print "WARNING: failed to restore FileBrowserNE named Config File Browser in network masterNet"
    print_exc()
    Config_File_Browser_3=None

try:
    ## saving node AMDws ##
    from NetworkEditor.macros import MacroNode
    AMDws_4 = MacroNode(name='AMDws')
    masterNet.addNode(AMDws_4, 357, 184)
    output_Ports_6 = AMDws_4.macroNetwork.opNode
    apply(output_Ports_6.configure, (), {'paramPanelImmediate': 1, 'expanded': False})
예제 #7
0
                                                  name='PublicServerLigandDB',
                                                  library=Adt)
    masterNet.addNode(PublicServerLigandDB_1, 419, 38)
    PublicServerLigandDB_1.inputPortByName['server_lib'].widget.set(r"sample",
                                                                    run=False)
    apply(PublicServerLigandDB_1.configure, (), {'paramPanelImmediate': 1})
except:
    print "WARNING: failed to restore PublicServerLigandDB named PublicServerLigandDB in network masterNet"
    print_exc()
    PublicServerLigandDB_1 = None

try:
    ## saving node Vina Config File Browser ##
    from Vision.StandardNodes import FileBrowserNE
    Vina_Config_File_Browser_2 = FileBrowserNE(constrkw={},
                                               name='Vina Config File Browser',
                                               library=stdlib)
    masterNet.addNode(Vina_Config_File_Browser_2, 798, 32)
    Vina_Config_File_Browser_2.inputPortByName['filename'].widget.set(
        r"VinaVSpublic_0.1_input/test.config", run=False)
    apply(Vina_Config_File_Browser_2.configure, (), {'paramPanelImmediate': 1})
except:
    print "WARNING: failed to restore FileBrowserNE named Vina Config File Browser in network masterNet"
    print_exc()
    Vina_Config_File_Browser_2 = None

try:
    ## saving node PrepareReceptor ##
    from Adt.Macro.PrepareReceptor import PrepareReceptor
    PrepareReceptor_3 = PrepareReceptor(constrkw={},
                                        name='PrepareReceptor',
예제 #8
0
        # in1 is known in the scope of the eval function
        result = eval(command)
        self.outputData(result=result)
"""
    Image_open_in1__44.configure(function=code)
    apply(Image_open_in1__44.configure, (), {'expanded': True})
except:
    print "WARNING: failed to restore Eval named Image.open(in1) in network masterNet"
    print_exc()
    Image_open_in1__44 = None

try:
    ## saving node File Browser ##
    from Vision.StandardNodes import FileBrowserNE
    File_Browser_45 = FileBrowserNE(constrkw={},
                                    name='File Browser',
                                    library=stdlib)
    masterNet.addNode(File_Browser_45, 55, 17)
    File_Browser_45.inputPortByName['filename'].widget.set("Data/lena.jpg",
                                                           run=False)
    apply(File_Browser_45.configure, (), {'expanded': True})
except:
    print "WARNING: failed to restore FileBrowserNE named File Browser in network masterNet"
    print_exc()
    File_Browser_45 = None

try:
    ## saving node Cast ##
    from Vision.StandardNodes import Cast
    Cast_46 = Cast(constrkw={}, name='Cast', library=stdlib)
    masterNet.addNode(Cast_46, 79, 120)