vis.f_GoI(List_TP)
vis.f_plot_trajectory(isLegend=True,
isGoI=True,
isOutput=True,
isGrid=False,
isLabel=False,
style=None,
FileName='Trajectories_KMeans_tSNE_TP.pdf')
## Visualization by tSNE-signature
vis.f_set_df_tsne(ops.sig_tSNE)
vis.f_GoI(List_Cluster)
vis.f_plot_TSNE(FileName='TSNE_KMeans_tSNE_Cluster.pdf',
isTrans=False,
isLabel=False,
isGoI=True,
isOutput=True)
vis.f_GoI(List_Pred)
vis.f_plot_TSNE(FileName='TSEN_KMeans_tSNE_Pred.pdf',
isTrans=False,
isLabel=False,
isGoI=True,
isOutput=True)
vis.f_GoI(List_TP)
vis.f_plot_TSNE(FileName='TSEN_KMeans_tSNE_TP.pdf',
isTrans=False,
isLabel=False,
isGoI=True,
isOutput=True)
isGrid=False,
isLabel=False,
style=None,
FileName='Trajectories_HMM_TP.pdf')
## Plot tSNE signature of cluseter
ops = Operations()
X = ops.f_Inhibitors_upsidedown()
ops = Operations(X)
ops.f_get_TSNE()
vis.f_set_df_tsne(ops.df_tsne)
vis.f_GoI(glist)
vis.f_plot_TSNE(FileName='TSNE_HMM_Cluster.pdf',
isTrans=True,
isLabel=False,
isGoI=True,
isOutput=True)
vis.f_GoI(Pred_set)
vis.f_plot_TSNE(FileName='TSEN_HMM_Pred.pdf',
isTrans=True,
isLabel=False,
isGoI=True,
isOutput=True)
vis.f_GoI(TP_set)
vis.f_plot_TSNE(FileName='TSEN_HMM_TP.pdf',
isTrans=True,
isLabel=False,
isGoI=True,
isOutput=True)