def copy_files(self, tofolder):
"""
Move wrfout* files to folder.
Create folder if it doesn't exist
Move *.TS files if they exist
Copy namelist.input to that folder.
Copy rsl.error.0000 to the folder.
Input(s):
args = names of folder tree, in order of depth.
"""
root = self.C.path_to_storage
topath = os.path.join(root, tofolder)
utils.trycreate(topath)
files = {"wrfout_d0*": "mv", "namelist.input": "cp", "rsl.error.0000": "cp"}
if len(glob.glob("*.TS")):
# hi-res time series files
files["*.TS"] = "mv"
files["tslist"] = "cp"
for f, transfer in files.iteritems():
fs = os.path.join(self.C.path_to_WRF, f)
command = "%s %s %s" % (transfer, fs, topath)
os.system(command)
del command
# Finally the namelist.wps.
path_to_namelistwps = os.path.join(self.C.path_to_WPS, "namelist.wps")
"cp %s %s" % (path_to_namelistwps, topath)
def save_data(self, data, folder, fname, format='pickle'):
"""
Save array to file.
Needed by subclasses?
"""
# Strip file extension given
fname_base = os.path.splitext(fname)[0]
# Check for folder, create if necessary
utils.trycreate(folder)
# Create absolute path
fpath = os.path.join(folder, fname_base)
if format == 'pickle':
with open(fpath + '.pickle', 'wb') as f:
pickle.dump(data, f)
elif format == 'numpy':
N.save(fpath, data)
elif format == 'json':
j = json.dumps(data)
with open(fpath + '.json', 'w') as f:
print >> f, j
else:
print("Give suitable saving format.")
raise Exception
print("Saved file {0} to {1}.".format(fname, folder))
def save(self,outpath,fname):
# fig.tight_layout()
if fname[-4:] == '.png':
pass
else:
fname = fname + '.png'
utils.trycreate(outpath)
fpath = os.path.join(outpath,fname)
#self.fig.savefig(fpath)
self.fig.savefig(fpath,bbox_inches='tight')
print("Saving figure {0}".format(fpath))
plt.close(self.fig)
def save(self, outpath, fname):
# fig.tight_layout()
if fname[-4:] == '.png':
pass
else:
fname = fname + '.png'
utils.trycreate(outpath)
fpath = os.path.join(outpath, fname)
#self.fig.savefig(fpath)
self.fig.savefig(fpath, bbox_inches='tight')
print("Saving figure {0}".format(fpath))
plt.close(self.fig)
def plot(self,va,lv,times,**kwargs):
for t in times:
fig = plt.figure()
data = self.get(va,lv,t)
m, x, y = self.basemap_setup()
if 'scale' in kwargs:
S = kwargs['scale']
f1 = m.contour(x,y,data,S,colors='k')
else:
f1 = m.contour(x,y,data,colors='k')
if self.C.plot_titles:
title = utils.string_from_time('title',t)
plt.title(title)
if 'wind_overlay' in kwargs:
jet = kwargs['wind_overlay']
wind = self.get('wind',lv,t)
windplot = m.contourf(x,y,wind,jet,alpha=0.6)
plt.colorbar(windplot)
elif 'W_overlay' in kwargs:
Wscale = kwargs['W_overlay']
W = self.get('W',lv,t)
windplot = m.contourf(x,y,W,alpha=0.6)
plt.colorbar(windplot)
# if self.C.colorbar:
# plt.colorbar(orientation='horizontal')
datestr = utils.string_from_time('output',t)
fname = '_'.join(('ECMWF',va,str(lv),datestr)) + '.png'
print(("Plotting {0} at {1} for {2}".format(
va,lv,datestr)))
plt.clabel(f1, inline=1, fmt='%4u', fontsize=12, colors='k')
utils.trycreate(self.C.output_root)
plt.savefig(os.path.join(self.C.output_root,fname))
plt.clf()
plt.close()
def plot(self, va, lv, times, **kwargs):
for t in times:
fig = plt.figure()
data = self.get(va, lv, t)
m, x, y = self.basemap_setup()
if 'scale' in kwargs:
S = kwargs['scale']
f1 = m.contour(x, y, data, S, colors='k')
else:
f1 = m.contour(x, y, data, colors='k')
if self.C.plot_titles:
title = utils.string_from_time('title', t)
plt.title(title)
if 'wind_overlay' in kwargs:
jet = kwargs['wind_overlay']
wind = self.get('wind', lv, t)
windplot = m.contourf(x, y, wind, jet, alpha=0.6)
plt.colorbar(windplot)
elif 'W_overlay' in kwargs:
Wscale = kwargs['W_overlay']
W = self.get('W', lv, t)
windplot = m.contourf(x, y, W, alpha=0.6)
plt.colorbar(windplot)
# if self.C.colorbar:
# plt.colorbar(orientation='horizontal')
datestr = utils.string_from_time('output', t)
fname = '_'.join(('ECMWF', va, str(lv), datestr)) + '.png'
print(("Plotting {0} at {1} for {2}".format(va, lv, datestr)))
plt.clabel(f1, inline=1, fmt='%4u', fontsize=12, colors='k')
utils.trycreate(self.C.output_root)
plt.savefig(os.path.join(self.C.output_root, fname))
plt.clf()
plt.close()
def copy_files(self, fromfolder, tofolder, matchfs=False):
"""Move wrfout files to folder.
Create folder if it doesn't exist
Move .TS files if they exist
Copy namelist.input to that folder.
Copy rsl.error.0000 to the folder.
Input(s):
args = names of folder tree, in order of depth.
"""
root = self.path_to_storage
# topath = os.path.join(root,tofolder)
utils.trycreate(tofolder)
if not matchfs:
files = {
'wrfout_d0*': 'mv',
'namelist.input': 'cp',
'rsl.error.0000': 'cp'
}
else:
files = matchfs
# if len(glob.glob('*.TS')):
# files['*.TS'] = 'mv'
# files['tslist'] = 'cp'
for f, transfer in files.items():
fs = os.path.join(fromfolder, f)
fout = os.path.join(tofolder, f)
command = '{0} {1} {2}'.format(transfer, fs, fout)
os.system(command)
del command
if self.doWPS:
# Finally the namelist.wps.
path_to_namelistwps = os.path.join(self.path_to_WPS,
'namelist.wps')
fout = os.path.join(tofolder, 'namelist.wps')
'cp {0} {1}'.format(path_to_namelistwps, fout)
def copy_files(self,fromfolder,tofolder,matchfs=False):
"""Move wrfout files to folder.
Create folder if it doesn't exist
Move .TS files if they exist
Copy namelist.input to that folder.
Copy rsl.error.0000 to the folder.
Input(s):
args = names of folder tree, in order of depth.
"""
root = self.path_to_storage
# topath = os.path.join(root,tofolder)
utils.trycreate(tofolder)
if not matchfs:
files = {'wrfout_d0*':'mv','namelist.input':'cp',
'rsl.error.0000':'cp'}
else:
files = matchfs
# if len(glob.glob('*.TS')):
# files['*.TS'] = 'mv'
# files['tslist'] = 'cp'
for f,transfer in files.items():
fs = os.path.join(fromfolder,f)
fout = os.path.join(tofolder,f)
command = '{0} {1} {2}'.format(transfer,fs,fout)
os.system(command)
del command
if self.doWPS:
# Finally the namelist.wps.
path_to_namelistwps = os.path.join(self.path_to_WPS,'namelist.wps')
fout = os.path.join(tofolder,'namelist.wps')
'cp {0} {1}'.format(path_to_namelistwps,fout)
def copy_files(self, tofolder):
"""
Move wrfout* files to folder.
Create folder if it doesn't exist
Move *.TS files if they exist
Copy namelist.input to that folder.
Copy rsl.error.0000 to the folder.
Input(s):
args = names of folder tree, in order of depth.
"""
root = self.C.path_to_storage
topath = os.path.join(root, tofolder)
utils.trycreate(topath)
files = {
'wrfout_d0*': 'mv',
'namelist.input': 'cp',
'rsl.error.0000': 'cp'
}
if len(glob.glob('*.TS')):
# hi-res time series files
files['*.TS'] = 'mv'
files['tslist'] = 'cp'
for f, transfer in files.iteritems():
fs = os.path.join(self.C.path_to_WRF, f)
command = '%s %s %s' % (transfer, fs, topath)
os.system(command)
del command
# Finally the namelist.wps.
path_to_namelistwps = os.path.join(self.C.path_to_WPS, 'namelist.wps')
'cp %s %s' % (path_to_namelistwps, topath)
elif (p == 2) & (ex != "ICBC"):
img = M.image.imread(fpath)
ax.imshow(img)
else:
try:
img = M.image.imread(fpath)
except:
print "Skipping ", panel
else:
print "Plotting ", panel
ax.imshow(img)
ax.axis("off")
# import pdb; pdb.set_trace()
plt.title(panel)
# pdb.set_trace()
if ex == "STCH":
outfiledir = os.path.join(config.output_root, case_str, IC, ens, MP)
elif ex == "ICBC":
outfiledir = os.path.join(config.output_root, case_str, IC)
else:
outfiledir = os.path.join(config.output_root, case_str, IC, ens)
outfilename = "_".join(("postage", ex, va_str, lv_str, time_str)) + ".png"
outfilepath = os.path.join(outfiledir, outfilename)
print outfilepath
utils.trycreate(outfiledir)
# plt.tight_layout()
fig.savefig(outfilepath)
fig.clf()
clvs = N.arange(5,32.5,2.5)
cb = F.bmap.contourf(F.x,F.y,windmag,alpha=0.5,cmap=M.cm.copper_r,levels=clvs,extend='max')
# F.bmap.plot((lonA,lonB),(latA,latB),latlon=True,color='k')
# fig.subplots_adjust(bottom=0.12,right=0.9)
# cbar_ax = fig.add_axes([0.15,0.087,0.7,0.025])
# cbar_ax = False
# cbx = plt.colorbar(cb,ticks=False,cax=cbar_ax,orientation='horizontal')#,extend='both')
cbx = plt.colorbar(cb,orientation='horizontal',shrink=0.5)
cbx.set_label('Wind difference (m/s)')
fig.tight_layout()
fname = 'diff_wind.png'
fpath = os.path.join(outdir,fname)
utils.trycreate(outdir)
fig.savefig(fpath)
print(("Saved at {0}.".format(fpath)))
plt.close(fig)
# Two together
for nest in ('SINGLE','NESTED'):
fig,ax = plt.subplots(1,figsize=(4,4))
F = BirdsEye(ax=ax,fig=fig)
F.bmap,F.x,F.y = F.basemap_setup(lats=lats,lons=lons,)
xpts, ypts = F.bmap([lonB,lonA],[latB,latA])
F.bmap.plot(xpts,ypts,latlon=False,color='k')
n = 3
U = DATA[nest]['U']
U2 = U[::n,::n]
V = DATA[nest]['V']
U_diff = DATA["SINGLE"]["U"] - DATA["NESTED"]["U"]
V_diff = DATA["SINGLE"]["V"] - DATA["NESTED"]["V"]
F = BirdsEye(ax=ax, fig=fig)
F.bmap, F.x, F.y = F.basemap_setup(lats=lats, lons=lons)
n = 3
U_diff2 = -1 * U_diff[::n, ::n]
V_diff2 = -1 * V_diff[::n, ::n]
x = F.x[::n, ::n]
y = F.y[::n, ::n]
F.bmap.quiver(x, y, U_diff2, V_diff2, scale=500)
windmag = N.sqrt(U_diff ** 2 + V_diff ** 2)
clvs = N.arange(5, 32.5, 2.5)
cb = F.bmap.contourf(F.x, F.y, windmag, alpha=0.5, cmap=M.cm.copper_r, levels=clvs, extend="max")
# fig.subplots_adjust(bottom=0.12,right=0.9)
# cbar_ax = fig.add_axes([0.15,0.087,0.7,0.025])
# cbar_ax = False
# cbx = plt.colorbar(cb,ticks=False,cax=cbar_ax,orientation='horizontal')#,extend='both')
cbx = plt.colorbar(cb, orientation="horizontal", shrink=0.5)
cbx.set_label("Wind difference (m/s)")
fig.tight_layout()
fname = "diff_wind.png"
fpath = os.path.join(outdir, fname)
utils.trycreate(outdir)
fig.savefig(fpath)
print("Saved at {0}.".format(fpath))
plt.close(fig)
axtitle = 'Control'
elif plot=='RUC':
axtitle = ''
else:
axtitle = plot.replace('_',' ')
ax.set_title(axtitle)
if len(plotlist)==13:
axes.flat[-2].axis('off')
axes.flat[-1].axis('off')
if vrbl=='cref' or 'strongestwind':
axes.flat[1].axis('off')
# axes.flat[-1].colorbar(cb)
# plt.colorbar(cb,cax=cax)
# plt.colorbar(cb,cax=axes.flat[-1],use_gridspec=True)
fig.tight_layout(h_pad=0.01)
fig.subplots_adjust(wspace = 0.1, hspace = 0.1)
if vrbl is not 'sstrongestwind':
cbar_ax = fig.add_axes([0.81,0.12,0.16,0.023])
cb1 = plt.colorbar(cb,cax=cbar_ax,orientation='horizontal')#,extend='both')
cb1.set_label('Comp. Reflectivity (dBZ)')
sp_fname = p.create_fname(vrbl,utc=tstr,level=lv,f_prefix=IC,f_suffix=enstype)
sp_fpath = os.path.join(sp_outdir,sp_fname)
utils.trycreate(sp_outdir)
fig.savefig(sp_fpath)
plt.close(fig)
print(("Saving figure to {0}".format(sp_fpath)))
ax.set_title(axtitle)
if len(plotlist) == 13:
axes.flat[-2].axis('off')
axes.flat[-1].axis('off')
if vrbl == 'cref' or 'strongestwind':
axes.flat[1].axis('off')
# axes.flat[-1].colorbar(cb)
# plt.colorbar(cb,cax=cax)
# plt.colorbar(cb,cax=axes.flat[-1],use_gridspec=True)
fig.tight_layout(h_pad=0.01)
fig.subplots_adjust(wspace=0.1, hspace=0.1)
if vrbl is not 'sstrongestwind':
cbar_ax = fig.add_axes([0.81, 0.12, 0.16, 0.023])
cb1 = plt.colorbar(cb, cax=cbar_ax,
orientation='horizontal') #,extend='both')
cb1.set_label('Comp. Reflectivity (dBZ)')
sp_fname = p.create_fname(vrbl,
utc=tstr,
level=lv,
f_prefix=IC,
f_suffix=enstype)
sp_fpath = os.path.join(sp_outdir, sp_fname)
utils.trycreate(sp_outdir)
fig.savefig(sp_fpath)
plt.close(fig)
print(("Saving figure to {0}".format(sp_fpath)))
def plot_skewT(self,plot_time,plot_latlon,dom,save_output,save_plot=1):
# Defines the ranges of the plot, do not confuse with self.P_bot and self.P_top
self.barb_increments = {'half': 2.5,'full':5.0,'flag':25.0}
self.skewness = 37.5
self.P_bot = 100000.
self.P_top = 10000.
self.dp = 100.
self.plevs = N.arange(self.P_bot,self.P_top-1,-self.dp)
# pdb.set_trace()
prof_lat, prof_lon = plot_latlon
datestr = utils.string_from_time('output',plot_time)
t_idx = self.W.get_time_idx(plot_time,tuple_format=1)
y,x, exact_lat, exact_lon = gridded_data.getXY(self.W.lats1D,self.W.lons1D,prof_lat,prof_lon)
# Create figure
if save_plot:
height, width = (10,10)
fig = plt.figure(figsize=(width,height))
self.isotherms()
self.isobars()
self.dry_adiabats()
self.moist_adiabats()
P_slices = {'t': t_idx, 'la': y, 'lo': x}
H_slices = {'t':t_idx, 'lv':0, 'la':y, 'lo':x}
# pdb.set_trace()
P = self.W.get('pressure',P_slices)[0,:,0,0]
elev = self.W.get('HGT',H_slices)
thin_locs = gridded_data.thinned_barbs(P)
self.windbarbs(self.W.nc,t_idx,y,x,P,thin_locs,n=45,color='blue')
self.temperature(self.W.nc,t_idx,y,x,P,linestyle='solid',color='blue')
self.dewpoint(self.W.nc,t_idx,y,x,P,linestyle='dashed',color='blue')
xticks = N.arange(-20,51,5)
yticks = N.arange(100000.0,self.P_top-1,-10**4)
ytix = ["%4u" %(p/100.0) for p in yticks]
plt.xticks(xticks,['' if tick%10!=0 else str(tick) for tick in xticks])
plt.yticks(yticks,ytix)
plt.axis([-20,50,105000.0,20000.0])
plt.xlabel(r'Temperature ($^{\circ}$C) at 1000 hPa')
plt.xticks(xticks,['' if tick%10!=0 else str(tick) for tick in xticks])
plt.ylabel('Pressure (hPa)')
plt.yticks(yticks,ytix)
#yticks = N.arange(self.P_bot,P_t-1,-10**4)
#plt.yticks(yticks,yticks/100)
fname = '_'.join(('skewT',datestr,'{0:03d}'.format(x),'{0:03d}'.format(y))) + '.png'
utils.trycreate(self.path_to_output)
fpath = os.path.join(self.path_to_output,fname)
plt.savefig(fpath)
plt.close()
# For saving Skew T data
if save_output:
# Pickle files are saved here:
pickle_fname = '_'.join(('WRFsounding',datestr,'{0:03d}'.format(x),
'{0:03d}'.format(y)+'.p'))
pickle_path = os.path.join(self.C.pickledir,pickle_fname)
u,v = self.return_data('wind',self.W.nc,t_idx,y,x,thin_locs)
T = self.return_data('temp',self.W.nc,t_idx,y,x,thin_locs,P=P)
Td = self.return_data('dwpt',self.W.nc,t_idx,y,x,thin_locs,P=P)
data_dict = {'u':u,'v':v,'T':T,'Td':Td,'P':P}
with open(pickle_path,'wb') as p:
pickle.dump(data_dict,p)
print("Saving data to {0}".format(pickle_path))
return
elif (p == 2) & (ex != 'ICBC'):
img = M.image.imread(fpath)
ax.imshow(img)
else:
try:
img = M.image.imread(fpath)
except:
print("Skipping ", panel)
else:
print("Plotting ", panel)
ax.imshow(img)
ax.axis('off')
# import pdb; pdb.set_trace()
plt.title(panel)
# pdb.set_trace()
if ex == 'STCH':
outfiledir = os.path.join(config.output_root, case_str, IC, ens, MP)
elif ex == 'ICBC':
outfiledir = os.path.join(config.output_root, case_str, IC)
else:
outfiledir = os.path.join(config.output_root, case_str, IC, ens)
outfilename = '_'.join(('postage', ex, va_str, lv_str, time_str)) + '.png'
outfilepath = os.path.join(outfiledir, outfilename)
print(outfilepath)
utils.trycreate(outfiledir)
#plt.tight_layout()
fig.savefig(outfilepath)
fig.clf()
# Write back
assert N.all(newdata > 0.0)
# pdb.set_trace()
nc.variables['SMOIS'][:,:,:,:] = newdata
nc.close()
return f_out
#### PROCEDURE ####
for case,it in CASES.items:
for enstype in enstypes:
# Initial settings
cstr = "{:04d}{:02d}{:02d}".format(case.year,case.month,case.day)
istr = "{:02d}{:02d}".format(it.hour,it.minute)
pathtoWRFout_ci = os.path.join(pathtoWRFout,cstr,istr)
utils.trycreate(pathtoWRFout_ci)
namelistdir = os.path.join(pathtoWRF,'nls_{}'.format(enstype))
dirstr = "eachmember_{:04d}{:02d}{:02d}{:02d}{:02d}".format(
it.year,it.month,it.day,it.hour,it.minute)
# ICs file that needs renaming. Specific to member and time.
wrfstr = "wrfout_".format()
pathtoICs = "/work/nyussouf/WoF/{cstr}/NSSL-2M/EXP/{dirstr}/{wrfstr}".format(
cstr=cstr,dirstr=dirstr,wrfstr=wrfstr)
pathtoLBCs =
# Copy wrfout ICs and rename to wrfinput, make sure python namelist generator knows
# Run namelist generator - make sure it modifies the right wrfinputs
# Needs to edit time/date/grid lat/lon?
# Do 6 hour runs