def __init__(self, uri, wmauri, yarn=''):
"ctor with LTS uri (hdfs:///path/schema.avsc) and WMArchive uri"
self.uri = uri
if not hdfs.ls(self.uri):
raise Exception("No avro schema file found in provided uri: %s" %
uri)
self.hdir = self.uri.rsplit('/', 1)[0]
if not hdfs.path.isdir(self.hdir):
raise Exception('HDFS path %s does not exists' % self.hdir)
schema_doc = hdfs.load(self.uri)
self.schema = avro.schema.parse(schema_doc)
self.taskmgr = TaskManager()
self.wmauri = wmauri # WMArchive URL which will be used by submit
if not self.wmauri.endswith('/wmarchive/data'):
self.wmauri = '%s/wmarchive/data' % self.wmauri
self.yarn = yarn
def __init__(self, uri, wmauri, yarn=''):
"ctor with LTS uri (hdfs:///path/schema.avsc) and WMArchive uri"
self.uri = uri
if not hdfs.ls(self.uri):
raise Exception("No avro schema file found in provided uri: %s" % uri)
self.hdir = self.uri.rsplit('/', 1)[0]
if not hdfs.path.isdir(self.hdir):
raise Exception('HDFS path %s does not exists' % self.hdir)
schema_doc = hdfs.load(self.uri)
self.schema = avro.schema.parse(schema_doc)
self.taskmgr = TaskManager()
self.wmauri = wmauri # WMArchive URL which will be used by submit
if not self.wmauri.endswith('/wmarchive/data'):
self.wmauri = '%s/wmarchive/data' % self.wmauri
self.yarn = yarn
class LTSManager(object):
"Long-Term Storage manager based on HDFS/Spark back-end"
def __init__(self, uri, wmauri, yarn=''):
"ctor with LTS uri (hdfs:///path/schema.avsc) and WMArchive uri"
self.uri = uri
if not hdfs.ls(self.uri):
raise Exception("No avro schema file found in provided uri: %s" %
uri)
self.hdir = self.uri.rsplit('/', 1)[0]
if not hdfs.path.isdir(self.hdir):
raise Exception('HDFS path %s does not exists' % self.hdir)
schema_doc = hdfs.load(self.uri)
self.schema = avro.schema.parse(schema_doc)
self.taskmgr = TaskManager()
self.wmauri = wmauri # WMArchive URL which will be used by submit
if not self.wmauri.endswith('/wmarchive/data'):
self.wmauri = '%s/wmarchive/data' % self.wmauri
self.yarn = yarn
def status(self):
"Return status of taskmgr"
return dict(lts=self.taskmgr.status())
def lmap(self, spec, fields):
"map input spec/fields into ones suitable for LTS QL"
return spec, fields
def write(self, data, safe=None):
"Write API for LTS, currently we do not provide direct write access to LTS"
raise NotImplementedError
def read(self, spec, fields=None):
"Read API for LTS"
try:
if not spec:
spec = {}
if isinstance(spec, list):
spec = {'wmaid': {'$in': spec}}
return self.read_from_storage(spec) # list of wmaids
elif PAT_UID.match(str(spec)):
return self.read_from_storage([spec]) # one wmaid
else:
return self.submit(spec, fields)
except Exception as exp:
raise ReadError(str(exp))
def submit(self, spec, fields):
"""
Submit job to HDFS/Spark platform, returns list of hash ids
"""
# generate uid for given spec/fields
rep = json.dumps(dict(spec=spec, fields=fields))
wmaid = wmaHash(rep)
# submit spark job
self.taskmgr.spawn(self.submit_spark, wmaid, spec, fields)
# self.submit_spark(wmaid, spec, fields)
# return wmaids of submitted job
results = [wmaid]
return results
def read_from_storage(self, wmaids):
"Retrieve results from storage for given set of ids"
# this method provides read access for to STS/HDFS/HBase/Oracle
# back-end where results will be stored. So far we store results
# to STS and therefore will read from it.
return self.sts.read(wmaids)
def submit_spark(self, wmaid, spec, fields, wait=60):
"""
Submit function provides interface how to submit job to
HDFS/Spark/MR. It will use subprocess module to call
specific function, e.g. bash script (myspark)
The job parameters includes: HDFS directory pattern, schema file,
script name, spec file and store uri. The job will be routed to
yarn cluster. The myspark script will store results back to
provided store uri, i.e. WMArchive REST interface.
"""
"Run given command in subprocess"
hdir = ' '.join(make_hdfs_path(self.hdir, spec.pop('timerange')))
schema = self.uri
sfile = 'PySpark/RecordFinder.py'
if 'aggregate' in spec:
sfile = 'PySpark/RecordReader.py'
ppath = '/'.join(WMArchive.__file__.split('/')[:-1])
script = os.path.join(ppath, sfile)
data = json.dumps(dict(spec=spec, fields=fields))
os.environ[
'PYTHONPATH'] = os.environ['PYTHONPATH'] + ':%s/PySpark' % ppath
cmd = 'myspark %s --hdir="%s" --schema=%s --script=%s --spec=\'%s\' --store=%s --wmaid=%s' \
% (self.yarn, hdir, schema, script, data, self.wmauri, wmaid)
print(tstamp("WMArchive::LTS"), cmd)
proc = subprocess.Popen(cmd,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
shell=True,
env=os.environ)
# wait for process if we use taskmgr. The taskmgr has internal queue
# which controls number of running jobs
proc.wait()
class LTSManager(object):
"Long-Term Storage manager based on HDFS/Spark back-end"
def __init__(self, uri, wmauri, yarn=''):
"ctor with LTS uri (hdfs:///path/schema.avsc) and WMArchive uri"
self.uri = uri
if not hdfs.ls(self.uri):
raise Exception("No avro schema file found in provided uri: %s" % uri)
self.hdir = self.uri.rsplit('/', 1)[0]
if not hdfs.path.isdir(self.hdir):
raise Exception('HDFS path %s does not exists' % self.hdir)
schema_doc = hdfs.load(self.uri)
self.schema = avro.schema.parse(schema_doc)
self.taskmgr = TaskManager()
self.wmauri = wmauri # WMArchive URL which will be used by submit
if not self.wmauri.endswith('/wmarchive/data'):
self.wmauri = '%s/wmarchive/data' % self.wmauri
self.yarn = yarn
def status(self):
"Return status of taskmgr"
return dict(lts=self.taskmgr.status())
def lmap(self, spec, fields):
"map input spec/fields into ones suitable for LTS QL"
return spec, fields
def write(self, data, safe=None):
"Write API for LTS, currently we do not provide direct write access to LTS"
raise NotImplementedError
def read(self, spec, fields=None):
"Read API for LTS"
try:
if not spec:
spec = {}
if isinstance(spec, list):
spec = {'wmaid': {'$in': spec}}
return self.read_from_storage(spec) # list of wmaids
elif PAT_UID.match(str(spec)):
return self.read_from_storage([spec]) # one wmaid
else:
return self.submit(spec, fields)
except Exception as exp:
raise ReadError(str(exp))
def submit(self, spec, fields):
"""
Submit job to HDFS/Spark platform, returns list of hash ids
"""
# generate uid for given spec/fields
rep = json.dumps(dict(spec=spec, fields=fields))
wmaid = wmaHash(rep)
# submit spark job
self.taskmgr.spawn(self.submit_spark, wmaid, spec, fields)
# self.submit_spark(wmaid, spec, fields)
# return wmaids of submitted job
results = [wmaid]
return results
def read_from_storage(self, wmaids):
"Retrieve results from storage for given set of ids"
# this method provides read access for to STS/HDFS/HBase/Oracle
# back-end where results will be stored. So far we store results
# to STS and therefore will read from it.
return self.sts.read(wmaids)
def submit_spark(self, wmaid, spec, fields, wait=60):
"""
Submit function provides interface how to submit job to
HDFS/Spark/MR. It will use subprocess module to call
specific function, e.g. bash script (myspark)
The job parameters includes: HDFS directory pattern, schema file,
script name, spec file and store uri. The job will be routed to
yarn cluster. The myspark script will store results back to
provided store uri, i.e. WMArchive REST interface.
"""
"Run given command in subprocess"
hdir = ' '.join(make_hdfs_path(self.hdir, spec.pop('timerange')))
schema = self.uri
sfile = 'PySpark/RecordFinder.py'
if 'aggregate' in spec:
sfile = 'PySpark/RecordReader.py'
ppath = '/'.join(WMArchive.__file__.split('/')[:-1])
script = os.path.join(ppath, sfile)
data = json.dumps(dict(spec=spec, fields=fields))
os.environ['PYTHONPATH']=os.environ['PYTHONPATH']+':%s/PySpark' % ppath
cmd = 'myspark %s --hdir="%s" --schema=%s --script=%s --spec=\'%s\' --store=%s --wmaid=%s' \
% (self.yarn, hdir, schema, script, data, self.wmauri, wmaid)
print(tstamp("WMArchive::LTS"), cmd)
proc = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, shell=True, env=os.environ)
# wait for process if we use taskmgr. The taskmgr has internal queue
# which controls number of running jobs
proc.wait()
