def postProcess(self, _edObject=None):
EDPluginControl.postProcess(self)
self.DEBUG("EDPluginControlSaxsAnalysisv1_0.postProcess")
# Create some output data
strLog = """Rg = %.2f +/- %2f
I(0) = %.2e +/- %.2e
Points %i to %i
Quality: %4.2f%% Aggregated: %s""" % (
self.autoRg.rg.value, self.autoRg.rgStdev.value,
self.autoRg.i0.value, self.autoRg.i0Stdev.value,
self.autoRg.firstPointUsed.value, self.autoRg.lastPointUsed.value,
self.autoRg.quality.value * 100., self.autoRg.isagregated.value)
if self.gnom is None:
strLog += """
datGnom failed"""
else:
strLog += """
Dmax = %12.2f Total = %12.2f
Guinier = %12.2f Gnom = %12.2f""" % (
self.gnom.dmax.value, self.gnom.total.value,
self.gnom.rgGuinier.value, self.gnom.rgGnom.value)
if self.xVolume is None:
strLog += """
datPorod failed"""
else:
strLog += """
Volume = %12.2f""" % (self.xVolume.value)
xsDataResult = XSDataResultSaxsAnalysis(
autoRg=self.autoRg,
gnom=self.gnom,
volume=self.xVolume,
status=XSDataStatus(executiveSummary=XSDataString(strLog)))
self.setDataOutput(xsDataResult)
def __init__(self):
"""
"""
EDPluginControl.__init__(self)
self.setXSDataInputClass(XSDataInputSaxsAnalysis)
self.edPluginAutoRg = None
self.edPluginDatPorod = None
self.edPluginDatGnom = None
self.scatterFile = None
self.gnomFile = None
self.autoRg = None
self.gnom = None
self.xVolume = None
self.xsDataResult = XSDataResultSaxsAnalysis()
def testExecute(self):
"""
"""
self.run()
plugin = self.getPlugin()
################################################################################
# Compare XSDataResults
################################################################################
strExpectedOutput = self.readAndParseFile(self.getReferenceDataOutputFile())
EDVerbose.DEBUG("Checking obtained result...")
xsDataResultReference = XSDataResult.parseString(strExpectedOutput)
xsDataResultObtained = plugin.getDataOutput()
EDAssert.strAlmostEqual(xsDataResultReference.marshal(), xsDataResultObtained.marshal(), "XSDataResult output are the same", _strExcluded="bioSaxs")