def process(self, _edObject=None):
EDPluginControl.process(self)
self.DEBUG("EDPluginControlH5ToCBFv1_0.process")
imageNumber = self.dataInput.imageNumber.value
if self.dataInput.hdf5ImageNumber is None:
hdf5ImageNumber = imageNumber
else:
hdf5ImageNumber = self.dataInput.hdf5ImageNumber.value
if self.dataInput.ispybDataCollection is None:
xsDataInputRetrieveDataCollection = XSDataInputRetrieveDataCollection(
)
xsDataImage = XSDataImage(self.dataInput.hdf5File.path)
xsDataInputRetrieveDataCollection.image = xsDataImage
self.edPluginISPyBRetrieveDataCollection.dataInput = xsDataInputRetrieveDataCollection
self.edPluginISPyBRetrieveDataCollection.executeSynchronous()
xsDataResultRetrieveDataCollection = self.edPluginISPyBRetrieveDataCollection.dataOutput
dataCollection = xsDataResultRetrieveDataCollection.dataCollection
else:
dataCollection = self.dataInput.ispybDataCollection
if dataCollection is not None:
if dataCollection.overlap is None:
overlap = 0.0
else:
overlap = dataCollection.overlap
axisStart = dataCollection.axisStart
oscillationRange = dataCollection.axisRange
axisStartNew = axisStart - (overlap +
oscillationRange) * (imageNumber - 1)
dataCollection.axisStart = axisStartNew
xsDataISPyBDataCollection = XSDataISPyBDataCollection.parseString(
dataCollection.marshal())
else:
xsDataISPyBDataCollection = None
xsDataInputH5ToCBF = XSDataInputH5ToCBF()
xsDataInputH5ToCBF.hdf5File = self.dataInput.hdf5File
xsDataInputH5ToCBF.imageNumber = self.dataInput.imageNumber
xsDataInputH5ToCBF.hdf5ImageNumber = XSDataInteger(hdf5ImageNumber)
xsDataInputH5ToCBF.dataCollection = xsDataISPyBDataCollection
xsDataInputH5ToCBF.forcedOutputDirectory = self.dataInput.forcedOutputDirectory
self.edPluginEDPluginH5ToCBF.dataInput = xsDataInputH5ToCBF
self.edPluginEDPluginH5ToCBF.executeSynchronous()
if self.edPluginEDPluginH5ToCBF.dataOutput is not None:
self.dataOutput.outputCBFFile = self.edPluginEDPluginH5ToCBF.dataOutput.outputCBFFile
if dataCollection is not None:
self.dataOutput.ispybDataCollection = XSDataISPyBDataCollection.parseString(
dataCollection.marshal())
def testGenerateMiniCBFHeader(self):
edPluginH5ToCBF = self.createPlugin()
xsDataInputH5ToCBF = XSDataInputH5ToCBF.parseFile(self.strReferenceInputFile)
miniCBFHeader = edPluginH5ToCBF.generateMiniCBFHeader(xsDataInputH5ToCBF)
print miniCBFHeader
def testGenerateCommands(self):
edPluginH5ToCBF = self.createPlugin()
xsDataInputH5ToCBF = XSDataInputH5ToCBF.parseFile(self.strReferenceInputFile)
strCommandLine = edPluginH5ToCBF.generateCommands(xsDataInputH5ToCBF)
print(strCommandLine)
