def testGenerateXSDataIntegrationSubWedgeResult(self): strFilename = "XSDataMOSFLMOutputIntegration_reference.xml" strPath = os.path.join(self.m_strDataPath, strFilename) strXMLMOSFLMOutputIntegration = EDUtilsTest.readAndParseFile(strPath) from XSDataMOSFLMv10 import XSDataMOSFLMOutputIntegration xsDataMOSFLMOutputIntegration = XSDataMOSFLMOutputIntegration.parseString(strXMLMOSFLMOutputIntegration) from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10 xsDataIntegrationSubWedgeResult = EDHandlerXSDataMOSFLMv10.generateXSDataIntegrationSubWedgeResult(xsDataMOSFLMOutputIntegration) strReferenceFilename = "XSDataIntegrationSubWedgeResult_reference.xml" strReferencePath = os.path.join(self.m_strDataPath, strReferenceFilename) strXMLIntegrationSubWedgeReference = EDUtilsTest.readAndParseFile(strReferencePath) from XSDataMXv1 import XSDataIntegrationSubWedgeResult xsDataIntegrationSubWedgeResult = XSDataIntegrationSubWedgeResult.parseString(strXMLIntegrationSubWedgeReference) EDAssert.equal(xsDataIntegrationSubWedgeResult.marshal(), xsDataIntegrationSubWedgeResult.marshal())
def testGenerateXSDataIntegrationSubWedgeResult(self): strFilename = "XSDataMOSFLMOutputIntegration_reference.xml" strPath = os.path.join(self.m_strDataPath, strFilename) strXMLMOSFLMOutputIntegration = EDUtilsTest.readAndParseFile(strPath) from XSDataMOSFLMv10 import XSDataMOSFLMOutputIntegration xsDataMOSFLMOutputIntegration = XSDataMOSFLMOutputIntegration.parseString( strXMLMOSFLMOutputIntegration) from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10 xsDataIntegrationSubWedgeResult = EDHandlerXSDataMOSFLMv10.generateXSDataIntegrationSubWedgeResult( xsDataMOSFLMOutputIntegration) strReferenceFilename = "XSDataIntegrationSubWedgeResult_reference.xml" strReferencePath = os.path.join(self.m_strDataPath, strReferenceFilename) strXMLIntegrationSubWedgeReference = EDUtilsTest.readAndParseFile( strReferencePath) from XSDataMXv1 import XSDataIntegrationSubWedgeResult xsDataIntegrationSubWedgeResult = XSDataIntegrationSubWedgeResult.parseString( strXMLIntegrationSubWedgeReference) EDAssert.equal(xsDataIntegrationSubWedgeResult.marshal(), xsDataIntegrationSubWedgeResult.marshal())
def generateXSDataIntegrationSubWedgeResult( _xsDataMOSFLMOutputIntegration, _xsDataExperimentalCondition=None): """ Translation from XSDataMOSFLMOutputIntegration to XSDataIntegrationSubWedgeResult. """ EDVerbose.DEBUG( "EDHandlerXSDataMOSFLMv10.generateXSDataIntegrationInput") EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10") xsDataIntegrationSubWedgeResult = XSDataIntegrationSubWedgeResult() xsDataExperimentalConditionRefined = None if (_xsDataExperimentalCondition is None): xsDataExperimentalConditionRefined = XSDataExperimentalCondition() else: # Copy the incoming experimental condition xmlExperimentalCondition = _xsDataExperimentalCondition.marshal() xsDataExperimentalConditionRefined = XSDataExperimentalCondition.parseString( xmlExperimentalCondition) xsDataDetector = xsDataExperimentalConditionRefined.getDetector() if (xsDataDetector is None): xsDataDetector = XSDataDetector() if _xsDataMOSFLMOutputIntegration.getBestfilePar() is not None: xsDataIntegrationSubWedgeResult.setBestfilePar( XSDataString(_xsDataMOSFLMOutputIntegration.getBestfilePar(). getValue())) xsDataIntegrationSubWedgeResult.setBestfileDat( XSDataString(_xsDataMOSFLMOutputIntegration.getBestfileDat(). getValue())) xsDataIntegrationSubWedgeResult.setBestfileHKL( XSDataString(_xsDataMOSFLMOutputIntegration.getBestfileHKL(). getValue())) xsDataLengthRefinedDistance = _xsDataMOSFLMOutputIntegration.getRefinedDistance( ) if (xsDataLengthRefinedDistance is not None): xsDataDetector.setDistance(xsDataLengthRefinedDistance) xsDataMOSFLMBeamPositionRefined = _xsDataMOSFLMOutputIntegration.getRefinedBeam( ) if (xsDataMOSFLMBeamPositionRefined is not None): xsDataDetector.setBeamPositionX( XSDataLength( xsDataMOSFLMBeamPositionRefined.getX().getValue())) xsDataDetector.setBeamPositionY( XSDataLength( xsDataMOSFLMBeamPositionRefined.getY().getValue())) xsDataExperimentalConditionRefined.setDetector(xsDataDetector) xsDataIntegrationSubWedgeResult.setExperimentalConditionRefined( xsDataExperimentalConditionRefined) if (_xsDataMOSFLMOutputIntegration.getGeneratedMTZFile() is not None): xsDataIntegrationSubWedgeResult.setGeneratedMTZFile( _xsDataMOSFLMOutputIntegration.getGeneratedMTZFile()) xsDataStatisticsIntegration = XSDataStatisticsIntegration() if (_xsDataMOSFLMOutputIntegration.getOverallIOverSigma() is not None): xsDataStatisticsIntegration.setIOverSigmaOverall( XSDataDouble(_xsDataMOSFLMOutputIntegration. getOverallIOverSigma().getValue())) if (_xsDataMOSFLMOutputIntegration.getHighestResolutionIOverSigma() is not None): xsDataStatisticsIntegration.setIOverSigmaAtHighestResolution( XSDataDouble(_xsDataMOSFLMOutputIntegration. getHighestResolutionIOverSigma().getValue())) if (_xsDataMOSFLMOutputIntegration.getRMSSpotDeviation() is not None): xsDataStatisticsIntegration.setRMSSpotDeviation( XSDataLength(_xsDataMOSFLMOutputIntegration. getRMSSpotDeviation().getValue())) if (_xsDataMOSFLMOutputIntegration.getNumberOfBadReflections() is not None): xsDataStatisticsIntegration.setNumberOfBadReflections( XSDataInteger(_xsDataMOSFLMOutputIntegration. getNumberOfBadReflections().getValue())) if (_xsDataMOSFLMOutputIntegration.getNumberOfFullyRecordedReflections( ) is not None): xsDataStatisticsIntegration.setNumberOfFullyRecordedReflections( XSDataInteger( _xsDataMOSFLMOutputIntegration. getNumberOfFullyRecordedReflections().getValue())) if (_xsDataMOSFLMOutputIntegration.getNumberOfNegativeReflections() is not None): xsDataStatisticsIntegration.setNumberOfNegativeReflections( XSDataInteger(_xsDataMOSFLMOutputIntegration. getNumberOfNegativeReflections().getValue())) if (_xsDataMOSFLMOutputIntegration.getNumberOfOverlappedReflections() is not None): xsDataStatisticsIntegration.setNumberOfOverlappedReflections( XSDataInteger(_xsDataMOSFLMOutputIntegration. getNumberOfOverlappedReflections().getValue())) if (_xsDataMOSFLMOutputIntegration.getNumberOfPartialReflections() is not None): xsDataStatisticsIntegration.setNumberOfPartialReflections( XSDataInteger(_xsDataMOSFLMOutputIntegration. getNumberOfPartialReflections().getValue())) if (_xsDataMOSFLMOutputIntegration.getNumberOfReflectionsGenerated() is not None): xsDataStatisticsIntegration.setNumberOfReflectionsGenerated( XSDataInteger(_xsDataMOSFLMOutputIntegration. getNumberOfReflectionsGenerated().getValue())) xsDataIntegrationSubWedgeResult.setStatistics( xsDataStatisticsIntegration) xsDataIntegrationSubWedgeResult.setExperimentalConditionRefined( xsDataExperimentalConditionRefined) for xsDataMOSFLMIntegrationStatisticsPerResolutionBin in _xsDataMOSFLMOutputIntegration.getStatisticsPerResolutionBin( ): xsDataStatisticsIntegrationPerResolutionBin = XSDataStatisticsIntegrationPerResolutionBin( ) if (xsDataMOSFLMIntegrationStatisticsPerResolutionBin. getMaxResolution() is not None): xsDataStatisticsIntegrationPerResolutionBin.setMaxResolution( XSDataDouble( xsDataMOSFLMIntegrationStatisticsPerResolutionBin. getMaxResolution().getValue())) if (xsDataMOSFLMIntegrationStatisticsPerResolutionBin. getMinResolution() is not None): xsDataStatisticsIntegrationPerResolutionBin.setMinResolution( XSDataDouble( xsDataMOSFLMIntegrationStatisticsPerResolutionBin. getMinResolution().getValue())) xsDataStatisticsIntegrationPerResolutionBin.setProfileFitted( EDHandlerXSDataMOSFLMv10. generateXSDataIntegrationStatisticsPerReflectionType( xsDataMOSFLMIntegrationStatisticsPerResolutionBin. getProfileFitted())) xsDataStatisticsIntegrationPerResolutionBin.setSummation( EDHandlerXSDataMOSFLMv10. generateXSDataIntegrationStatisticsPerReflectionType( xsDataMOSFLMIntegrationStatisticsPerResolutionBin. getSummation())) xsDataIntegrationSubWedgeResult.addStatisticsPerResolutionBin( xsDataStatisticsIntegrationPerResolutionBin) xsDataIntegrationSubWedgeResult.setIntegrationLogFile( _xsDataMOSFLMOutputIntegration.getPathToLogFile()) return xsDataIntegrationSubWedgeResult
def generateXSDataIntegrationSubWedgeResult(_xsDataMOSFLMOutputIntegration, _xsDataExperimentalCondition=None): """ Translation from XSDataMOSFLMOutputIntegration to XSDataIntegrationSubWedgeResult. """ EDVerbose.DEBUG("EDHandlerXSDataMOSFLMv10.generateXSDataIntegrationInput") EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10") xsDataIntegrationSubWedgeResult = XSDataIntegrationSubWedgeResult() xsDataExperimentalConditionRefined = None if (_xsDataExperimentalCondition is None): xsDataExperimentalConditionRefined = XSDataExperimentalCondition() else: # Copy the incoming experimental condition xmlExperimentalCondition = _xsDataExperimentalCondition.marshal() xsDataExperimentalConditionRefined = XSDataExperimentalCondition.parseString(xmlExperimentalCondition) xsDataDetector = xsDataExperimentalConditionRefined.getDetector() if (xsDataDetector is None): xsDataDetector = XSDataDetector() xsDataIntegrationSubWedgeResult.setBestfilePar(XSDataString(_xsDataMOSFLMOutputIntegration.getBestfilePar().getValue())) xsDataIntegrationSubWedgeResult.setBestfileDat(XSDataString(_xsDataMOSFLMOutputIntegration.getBestfileDat().getValue())) xsDataIntegrationSubWedgeResult.setBestfileHKL(XSDataString(_xsDataMOSFLMOutputIntegration.getBestfileHKL().getValue())) xsDataLengthRefinedDistance = _xsDataMOSFLMOutputIntegration.getRefinedDistance() if (xsDataLengthRefinedDistance is not None): xsDataDetector.setDistance(xsDataLengthRefinedDistance) xsDataMOSFLMBeamPositionRefined = _xsDataMOSFLMOutputIntegration.getRefinedBeam() if (xsDataMOSFLMBeamPositionRefined is not None): xsDataDetector.setBeamPositionX(XSDataLength(xsDataMOSFLMBeamPositionRefined.getX().getValue())) xsDataDetector.setBeamPositionY(XSDataLength(xsDataMOSFLMBeamPositionRefined.getY().getValue())) xsDataExperimentalConditionRefined.setDetector(xsDataDetector) xsDataIntegrationSubWedgeResult.setExperimentalConditionRefined(xsDataExperimentalConditionRefined) if (_xsDataMOSFLMOutputIntegration.getGeneratedMTZFile() is not None): xsDataIntegrationSubWedgeResult.setGeneratedMTZFile(_xsDataMOSFLMOutputIntegration.getGeneratedMTZFile()) xsDataStatisticsIntegration = XSDataStatisticsIntegration() if (_xsDataMOSFLMOutputIntegration.getOverallIOverSigma() is not None): xsDataStatisticsIntegration.setIOverSigmaOverall(XSDataDouble(_xsDataMOSFLMOutputIntegration.getOverallIOverSigma().getValue())) if (_xsDataMOSFLMOutputIntegration.getHighestResolutionIOverSigma() is not None): xsDataStatisticsIntegration.setIOverSigmaAtHighestResolution(XSDataDouble(_xsDataMOSFLMOutputIntegration.getHighestResolutionIOverSigma().getValue())) if (_xsDataMOSFLMOutputIntegration.getRMSSpotDeviation() is not None): xsDataStatisticsIntegration.setRMSSpotDeviation(XSDataLength(_xsDataMOSFLMOutputIntegration.getRMSSpotDeviation().getValue())) if (_xsDataMOSFLMOutputIntegration.getNumberOfBadReflections() is not None): xsDataStatisticsIntegration.setNumberOfBadReflections(XSDataInteger(_xsDataMOSFLMOutputIntegration.getNumberOfBadReflections().getValue())) if (_xsDataMOSFLMOutputIntegration.getNumberOfFullyRecordedReflections() is not None): xsDataStatisticsIntegration.setNumberOfFullyRecordedReflections(XSDataInteger(_xsDataMOSFLMOutputIntegration.getNumberOfFullyRecordedReflections().getValue())) if (_xsDataMOSFLMOutputIntegration.getNumberOfNegativeReflections() is not None): xsDataStatisticsIntegration.setNumberOfNegativeReflections(XSDataInteger(_xsDataMOSFLMOutputIntegration.getNumberOfNegativeReflections().getValue())) if (_xsDataMOSFLMOutputIntegration.getNumberOfOverlappedReflections() is not None): xsDataStatisticsIntegration.setNumberOfOverlappedReflections(XSDataInteger(_xsDataMOSFLMOutputIntegration.getNumberOfOverlappedReflections().getValue())) if (_xsDataMOSFLMOutputIntegration.getNumberOfPartialReflections() is not None): xsDataStatisticsIntegration.setNumberOfPartialReflections(XSDataInteger(_xsDataMOSFLMOutputIntegration.getNumberOfPartialReflections().getValue())) if (_xsDataMOSFLMOutputIntegration.getNumberOfReflectionsGenerated() is not None): xsDataStatisticsIntegration.setNumberOfReflectionsGenerated(XSDataInteger(_xsDataMOSFLMOutputIntegration.getNumberOfReflectionsGenerated().getValue())) xsDataIntegrationSubWedgeResult.setStatistics(xsDataStatisticsIntegration) xsDataIntegrationSubWedgeResult.setExperimentalConditionRefined(xsDataExperimentalConditionRefined) for xsDataMOSFLMIntegrationStatisticsPerResolutionBin in _xsDataMOSFLMOutputIntegration.getStatisticsPerResolutionBin(): xsDataStatisticsIntegrationPerResolutionBin = XSDataStatisticsIntegrationPerResolutionBin() if (xsDataMOSFLMIntegrationStatisticsPerResolutionBin.getMaxResolution() is not None): xsDataStatisticsIntegrationPerResolutionBin.setMaxResolution(XSDataDouble(xsDataMOSFLMIntegrationStatisticsPerResolutionBin.getMaxResolution().getValue())) if (xsDataMOSFLMIntegrationStatisticsPerResolutionBin.getMinResolution() is not None): xsDataStatisticsIntegrationPerResolutionBin.setMinResolution(XSDataDouble(xsDataMOSFLMIntegrationStatisticsPerResolutionBin.getMinResolution().getValue())) xsDataStatisticsIntegrationPerResolutionBin.setProfileFitted(EDHandlerXSDataMOSFLMv10.generateXSDataIntegrationStatisticsPerReflectionType(xsDataMOSFLMIntegrationStatisticsPerResolutionBin.getProfileFitted())) xsDataStatisticsIntegrationPerResolutionBin.setSummation(EDHandlerXSDataMOSFLMv10.generateXSDataIntegrationStatisticsPerReflectionType(xsDataMOSFLMIntegrationStatisticsPerResolutionBin.getSummation())) xsDataIntegrationSubWedgeResult.addStatisticsPerResolutionBin(xsDataStatisticsIntegrationPerResolutionBin) return xsDataIntegrationSubWedgeResult