def load_behavior_folders_from_matlab(path, name, timing_override = False):
date_dirs = [os.path.join(path,x) for x in os.listdir(path) if os.path.isdir(os.path.join(path, x))]
for date_dir in date_dirs:
start_time = time.time()
dirs = [os.path.join(date_dir, x) for x in os.listdir(date_dir) if 'cycle' not in x]
for dir in dirs:
cons = Cons(dir, timing_override)
print('[***] LOADED {0:<50s} in: {1:3.3f} seconds'.format(dir, time.time() - start_time))
save_path = os.path.join(Config.LOCAL_DATA_PATH, Config.LOCAL_DATA_BEHAVIOR_FOLDER,
name)
save_name = cons.NAME_MOUSE + '__' + cons.NAME_DATE + '__' + cons.NAME_PLANE
Config.save_cons_f(save_path, save_name, data=cons)
def load_single_from_matlab(data_path, save = True):
start_time = time.time()
eng = matlab.engine.start_matlab()
cons = Cons(data_path)
mat, _ = load_calcium_traces_from_matlab(cons.STORAGE_DATA, eng)
print('Time taken to load matfiles: {0:3.3f}'.format(time.time() - start_time))
print(mat.shape)
if save == True:
mouse = cons.NAME_MOUSE
date = cons.NAME_DATE
plane = cons.NAME_PLANE
save_path = os.path.join(Config.LOCAL_DATA_PATH, Config.LOCAL_DATA_SINGLE_FOLDER, mouse)
save_name = date + '_' + plane
Config.save_mat_f(save_path, save_name, data=mat)
Config.save_cons_f(save_path, save_name, data=cons)
return mat, cons
def load_timepoint_from_matlab(path, name, timing_override = False):
eng = matlab.engine.start_matlab()
data_path = os.path.join(path, 'data')
data_wildcard = os.path.join(data_path, '*.mat')
matfile_paths = glob.glob(data_wildcard)
for p in matfile_paths:
start_time = time.time()
mat, obj_name = load_calcium_traces_from_matlab(p, eng)
dir = eng.eval(obj_name + ".constants.DIR")
dir = 'I' + dir[1:]
cons = Cons(dir, timing_override)
print('[***] LOADED {0:<50s} in: {1:3.3f} seconds'.format(p, time.time() - start_time))
save_path = os.path.join(Config.LOCAL_DATA_PATH, Config.LOCAL_DATA_TIMEPOINT_FOLDER,
name)
save_name = cons.NAME_MOUSE + '__' + cons.NAME_DATE + '__' + cons.NAME_PLANE
Config.save_mat_f(save_path, save_name, data=mat)
Config.save_cons_f(save_path, save_name, data=cons)