a010_CreateFolders.main(
LOCAL_DEB_DATASET_PATH, LOCAL_DATASET_PATH_EXE, LOCAL_DATASET_PATH_LOG,
LOCAL_DATASET_PATH_DEBUG, LOCAL_DATASET_PATH_TRACE_SOMAS,
LOCAL_DATASET_PATH_DATA, LOCAL_DATASET_PATH_DATA_DEBUG,
LOCAL_DATASET_PATH_SEGM, LOCAL_DATASET_PATH_SEGM_DEBUG,
LOCAL_DATASET_PATH_SEGM_DEBUG_L2, LOCAL_DATASET_PATH_SEGM_TEMP,
GLOBAL_DATASET_PATH_RESULTS)
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
print "# Copy the files to the local dataset: " + DATA_FOLDER
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
if runCopy == 1:
start_1 = time.clock()
if haveCy5 == 1:
FILE_Cy5 = a020_CopyFiles.main(GLOBAL_DATASET_PATH,
LOCAL_DATASET_PATH_DATA, '*Cy5dsu.')
if haveTRT == 1:
FILE_TRI = a020_CopyFiles.main(GLOBAL_DATASET_PATH,
LOCAL_DATASET_PATH_DATA,
'*TRITCdsu.')
if haveGFP == 1:
FILE_GFP = a020_CopyFiles.main(GLOBAL_DATASET_PATH,
LOCAL_DATASET_PATH_DATA, '*GFPdsu.')
if haveDAP == 1:
FILE_DAP = a020_CopyFiles.main(GLOBAL_DATASET_PATH,
LOCAL_DATASET_PATH_DATA,
'*DAPIdsu.')
elapsed_1 = (time.clock() - start_1)
print "\t\tTime_1: " + str(elapsed_1)
if runCopy_db == 1:
# Different logic in case of other structure
# Different logic in case of other structure
if( MOVE_RESULTS == 1 ):
if( os.path.exists(GLOBAL_DATASET_PATH_RESULTS) ):
shutil.rmtree(GLOBAL_DATASET_PATH_RESULTS)
a010_CreateFolders.main( LOCAL_DEB_DATASET_PATH, LOCAL_DATASET_PATH_EXE, LOCAL_DATASET_PATH_LOG, LOCAL_DATASET_PATH_DEBUG, LOCAL_DATASET_PATH_TRACE_SOMAS, LOCAL_DATASET_PATH_DATA, LOCAL_DATASET_PATH_DATA_DEBUG, LOCAL_DATASET_PATH_SEGM, LOCAL_DATASET_PATH_SEGM_DEBUG, LOCAL_DATASET_PATH_SEGM_DEBUG_L2, LOCAL_DATASET_PATH_SEGM_TEMP, GLOBAL_DATASET_PATH_RESULTS )
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
print "# Copy the files to the local dataset: "+DATA_FOLDER
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
if runCopy == 1:
start_1 = time.clock()
if haveCy5 == 1:
FILE_Cy5 = a020_CopyFiles.main( GLOBAL_DATASET_PATH, LOCAL_DATASET_PATH_DATA, '*Cy5dsu.' )
if haveTRT == 1:
FILE_TRI = a020_CopyFiles.main( GLOBAL_DATASET_PATH, LOCAL_DATASET_PATH_DATA, '*TRITCdsu.' )
if haveGFP == 1:
FILE_GFP = a020_CopyFiles.main( GLOBAL_DATASET_PATH, LOCAL_DATASET_PATH_DATA, '*GFPdsu.' )
if haveDAP == 1:
FILE_DAP = a020_CopyFiles.main( GLOBAL_DATASET_PATH, LOCAL_DATASET_PATH_DATA, '*DAPIdsu.' )
elapsed_1 = (time.clock() - start_1)
print "\t\tTime_1: "+str(elapsed_1)
if runCopy_db == 1:
start_2 = time.clock()
runCopy_db_log = LOCAL_DATASET_PATH_LOG +'/runCopyProjections_db.log'
TEMP_FILE = open(runCopy_db_log, 'w')
TEMP_FILE.write('CopyLog\n')
TEMP_FILE.close()