def phenotypicDiversity(self, repertoire):
# Get the dominant genotype network for the repertoire
giant = self.caller.dominant_network(repertoire)
# Create an AccessibilityAnalyzer object
accAnalyzer = AccessibilityAnalyzer(repertoire, giant,
self.repToGiantDict,
self.inDataDict,
self.netBuilder,
self.bitManip,
self.isDoubleStranded)
# Compute phenotypic diversity and set it as a network attribute
giant["Diversity_index"] = accAnalyzer.getPhenotypicDivesity()
def neighborAbundance(self, repertoire):
# Get the dominant genotype network for the repertoire
giant = self.caller.dominant_network(repertoire)
# Create an AccessibilityAnalyzer object
accAnalyzer = AccessibilityAnalyzer(repertoire, giant,
self.repToGiantDict,
self.inDataDict,
self.netBuilder,
self.bitManip,
self.isDoubleStranded)
# Compute repertoire neighborhood abundance and set it as a network
# attribute
giant["Neighbor_abundance"] = accAnalyzer.getNeighborAbundance()
