def __init__(self, *args):
AnalysisModule.__init__(self, *args)
self.ui = Ui_Form()
self.ui.setupUi(self)
self.postGuiInit()
self.man = getManager()
self.ui.scannerDevCombo.setTypes('scanner')
self.ui.clampDevCombo.setTypes('clamp')
self.ui.cameraModCombo.setTypes('cameraModule')
self.ui.clampBaseStartSpin.setOpts(suffix='s', siPrefix=True, bounds=[0, None], step=1e-3)
self.ui.clampBaseStopSpin.setOpts(suffix='s', siPrefix=True, bounds=[0, None], step=1e-3)
self.ui.clampTestStartSpin.setOpts(suffix='s', siPrefix=True, bounds=[0, None], step=1e-3)
self.ui.clampTestStopSpin.setOpts(suffix='s', siPrefix=True, bounds=[0, None], step=1e-3)
self.ui.spikeThresholdSpin.setOpts(suffix='V', siPrefix=True, bounds=[None, None], dec=True, minStep=0.05)
self.ui.colorMapper.setFields([('maxPeak', {'mode': 'range', 'units': 'V'}),
('minPeak', {'mode': 'range', 'units': 'V'}),
('maxZScore', {'mode': 'range'}),
('minZScore', {'mode': 'range'}),
('nSpikes', {'mode': 'range'}),
])
self.tasks = {}
self.currentTask = None
self.ui.deleteBtn.clicked.connect(self.deleteSelected)
self.stateGroup.sigChanged.connect(self.stateChanged)
self.ui.taskList.currentItemChanged.connect(self.itemSelected)
self.ui.taskList.itemClicked.connect(self.itemClicked)
self.ui.recomputeBtn.clicked.connect(self.recompute)
def saveState(self):
state = AnalysisModule.saveState(self)
# remove some unnecessary information
state['colorMapper'].pop('fields', None)
return state
def __init__(self, *args):
AnalysisModule.__init__(self, *args)
self.ui = Ui_Form()
self.ui.setupUi(self)
self.postGuiInit()
self.man = getManager()
#self.image=pg.ImageView()
#self.ui.histogram.setImageItem(self.image)
#self.ui.histogram.autoHistogramRange()
#self.ui.plotWidget.addItem(self.image)
#self.ui.plotWidget.setLabel('bottom', 'Time', 's')
#self.ui.plotWidget.setLabel('left', 'Distance', 'm')
#self.ui.plotWidget.register('ImagingPlot')
self.ui.alphaSlider.valueChanged.connect(self.imageAlphaAdjust)
self.img = None ## image shown in camera module
self.ui.scannerComboBox.setTypes('scanner')
self.ui.detectorComboBox.setTypes('daqChannelGroup')
def __init__(self, *args):
AnalysisModule.__init__(self, *args)
self.layout = Qt.QGridLayout()
self.setLayout(self.layout)
self.splitter = Qt.QSplitter()
self.layout.addWidget(self.splitter)
self.ptree = ParameterTree()
self.splitter.addWidget(self.ptree)
self.imageView = pg.ImageView()
self.splitter.addWidget(self.imageView)
self.params = Parameter(name='imager', children=[
dict(name='scanner', type='interface', interfaceTypes=['scanner']),
dict(name='detectors', type='group', addText="Add detector.."),
dict(name='decomb', type='float', readonly=False, value=20e-6, suffix='s', siPrefix=True, bounds=[0, 1e-3], step=1e-6, decimals=5, children=[
dict(name='auto', type='action'),
dict(name='subpixel', type='bool', value=False),
]),
dict(name='downsample', type='int', value=1, suffix='x', bounds=[1,None]),
dict(name='display', type='bool', value=True),
dict(name='scanProgram', type='list', values=[]),
dict(name='Objective', type='str', value='Unknown', readonly=True),
dict(name='Filter', type='str', value='Unknown', readonly=True),
])
self.ptree.setParameters(self.params, showTop=False)
self.params.sigTreeStateChanged.connect(self.update)
self.params.child('detectors').sigAddNew.connect(self.addDetectorClicked)
self.params.child('decomb', 'auto').sigActivated.connect(self.autoDecomb)
self.man = getManager()
self.scannerDev = self.man.getDevice(self.params['scanner'])
# find first scope device that is parent of scanner
dev = self.scannerDev
while dev is not None and not isinstance(dev, Microscope):
dev = dev.parentDevice()
self.scopeDev = dev
self.lastFrame = None
# self.SUF = SUFA.ScannerUtilities()
# self.ui.alphaSlider.valueChanged.connect(self.imageAlphaAdjust)
self.img = pg.ImageItem() ## image shown in camera module
self.img.setLookupTable(self.imageView.ui.histogram.getLookupTable) # image fetches LUT from the ImageView
self.imageView.ui.histogram.sigLevelsChanged.connect(self._updateCamModImage)
self.imageView.imageItem.setAutoDownsample(True)
def __init__(self, *args):
AnalysisModule.__init__(self, *args)
self.ui = Ui_Form()
self.ui.setupUi(self)
self.postGuiInit()
self.man = getManager()
#devs = self.man.listDevices()
#for d in devs:
#self.ui.scannerDevCombo.addItem(d)
#self.ui.clampDevCombo.addItem(d)
#self.fillModuleList()
self.ui.scannerDevCombo.setTypes('scanner')
self.ui.clampDevCombo.setTypes('clamp')
self.ui.cameraModCombo.setTypes('cameraModule')
self.tasks = {}
self.currentTask = None
self.ui.deleteBtn.clicked.connect(self.deleteSelected)
self.stateGroup.sigChanged.connect(self.stateChanged)
self.ui.taskList.currentItemChanged.connect(self.itemSelected)
self.ui.taskList.itemClicked.connect(self.itemClicked)
self.ui.recomputeBtn.clicked.connect(self.recompute)
def __init__(self, *args):
AnalysisModule.__init__(self, *args)
self.ui = Ui_Form()
self.ui.setupUi(self)
self.postGuiInit()
self.man = getManager()
#devs = self.man.listDevices()
#for d in devs:
#self.ui.scannerDevCombo.addItem(d)
#self.ui.clampDevCombo.addItem(d)
#self.fillModuleList()
self.ui.scannerDevCombo.setTypes('scanner')
self.ui.clampDevCombo.setTypes('clamp')
self.ui.cameraModCombo.setTypes('cameraModule')
self.tasks = {}
self.currentTask = None
self.ui.deleteBtn.clicked.connect(self.deleteSelected)
self.stateGroup.sigChanged.connect(self.stateChanged)
self.ui.taskList.currentItemChanged.connect(self.itemSelected)
self.ui.taskList.itemClicked.connect(self.itemClicked)
self.ui.recomputeBtn.clicked.connect(self.recompute)
def quit(self):
AnalysisModule.quit(self)
for k in self.tasks:
self.tasks[k].close()
self.tasks.clear()
self.currentTask = None
def quit(self):
#QtCore.QObject.disconnect(getManager(), QtCore.SIGNAL('modulesChanged'), self.fillModuleList)
#getManager().sigModulesChanged.disconnect(self.fillModuleList)
AnalysisModule.quit(self)
for p in self.tasks.values():
p.close()
def quit(self):
AnalysisModule.quit(self)
def quit(self):
AnalysisModule.quit(self)
for k in self.tasks:
self.tasks[k].close()
self.tasks.clear()
self.currentTask = None
def quit(self):
#Qt.QObject.disconnect(getManager(), Qt.SIGNAL('modulesChanged'), self.fillModuleList)
#getManager().sigModulesChanged.disconnect(self.fillModuleList)
AnalysisModule.quit(self)
for p in self.tasks.values():
p.close()
def quit(self):
AnalysisModule.quit(self)
for p in self.tasks.values():
p.close()
def quit(self):
self.clear()
AnalysisModule.quit(self)