def get_all_3dinfo_dset_basic(fname):
'''Input: a volume 'pon which to run 3dinfo.
Output: dictionary whose keys are 3dinfo opt names relevant for a
single volume (not helpy ones or comparison ones like -same*); the
'-' part is part of the key here, at the moment.
There is no filtering of empty fields here-- the bog standard
outputs are all returned; each value in the dictionary is a list
of string(s), which may be null. See
"get_all_3dinfo_dset_neatly()" for some filtering/proc'ing of
opts.
'''
# ------- Quick check on dset being valid
cmd = '''3dinfo -prefix {fff}'''.format(fff=fname)
com = BASE.shell_com(cmd, capture=1, save_hist=0)
com.run()
if com.so[0] == 'NO-DSET':
print('+* WARNING: No valid dset of that name: {fff}\n.'
' Bye.'.format(fff=fname))
return {}
# ------- Get list of all opts in 3dinfo
cmd = '''apsearch -list_popts 3dinfo'''
com = BASE.shell_com(cmd, capture=1, save_hist=0)
com.run()
# filter out some ones we don't want
list_3dinfo_opts = []
for x in com.so:
y = x.strip()
if not (list_3dinfo_ignore.__contains__(y)):
list_3dinfo_opts.append(y)
dict_info = {}
for opt in list_3dinfo_opts:
cmd = '''3dinfo {ooo} {fff}'''.format(ooo=opt, fff=fname)
com = BASE.shell_com(cmd, capture=1, save_hist=0)
com.run()
dict_info[opt] = com.so
return dict_info
# --------------------------------------------------------------------
# QC block: "warns"
# item : censor fraction, per stimulus
# use if: there are stim files present, and censoring
ldep = ['stats_dset', 'censor_dset', 'ss_review_dset', 'xmat_stim']
if lat.check_dep(ap_ssdict, ldep):
# get the ss_review_basic info as a dict
rev_dict = lat.read_in_txt_to_dict(ap_ssdict['ss_review_dset'],
tmp_name='__tmp_ss_rev.json')
cmd = '''1d_tool.py -verb 0 -infile {xmat_stim} -show_labels
'''.format(**ap_ssdict)
com = BASE.shell_com(cmd, capture=1, save_hist=0)
com.run()
all_labels = com.so[0].split() # list of all labels
ban = lat.bannerize('Censor fraction (per stim)')
obase = 'qc_{:02d}'.format(idx)
cmd = lat.apqc_warns_cen_stim(obase,
"warns",
"cen_stim",
rev_dict=rev_dict,
label_list=all_labels)
str_FULL += ban
str_FULL += cmd
idx += 1