def set_directories(self): """decide on use of top_dir (use it or nothing - no anat_dir) ==> if top_dir is set, use $top_dir/short_names else just use anat and epi directly """ all_files = [self.uvars.val('dsets_A')] more_files = self.uvars.val('dsets_B') if more_files: all_files.append(more_files) top_dir, parent_dirs, short_dirs, short_names = \ UTIL.common_parent_dirs(all_files) if self.cvars.verb > 2: print('== top_dir = %s\n parent_dirs = %s\n short_dirs = %s\n' \ ' short_names = %s' \ %(top_dir, parent_dirs, short_dirs, short_names)) # and store it self.LV.top_dir = top_dir self.LV.parent_dirs = parent_dirs self.LV.short_dirs = short_dirs self.LV.short_names = short_names # if top_dir isn't long enough, do not bother with it if self.LV.top_dir.count('/') < 2: self.LV.top_dir = '' if self.cvars.verb > 2: print(' (top_dir not worth using...)')
def set_directories(self): """always use $top_dir with absolute paths to datasets """ inputs = [self.uvars.surf_vol, self.uvars.spec_file] if self.cvars.val('on_surface') == 'yes': if self.uvars.surf_mask != '': inputs.append(self.uvars.surf_mask) else: inputs.append(self.uvars.vol_mask) # try converting to absolute paths try: inputs = [ os.path.abspath(fname) for fname in inputs ] except: msg = '** cannot convert inputs to asolute path names:\n %s' % inputs self.errors.append(msg) return 1 top_dir, parent_dirs, short_dirs, short_names = \ UTIL.common_parent_dirs([inputs]) self.LV.top_dir = parent_dirs[0] # common parent dir self.LV.short_names = short_names # if top_dir is used, they are under it if self.cvars.verb > 2: if self.cvars.val('on_surface') != 'yes': print('-- set_dirs: top_dir = %s\n' \ ' short surf_vol = %s\n' \ ' short spec_file = %s\n' \ ' short vol_mask = %s\n' % (self.LV.top_dir, short_names[0][0], short_names[0][1], short_names[0][2])) else: # on surface print('-- set_dirs: top_dir = %s\n' \ ' short surf_vol = %s\n' \ ' short spec_file = %s\n' % (self.LV.top_dir, short_names[0][0], short_names[0][1])) if len(short_names[0]) > 2: print(' short surf_mask = %s\n' % short_names[0][2]) # if top_dir isn't long enough, do not bother with it if self.LV.top_dir.count('/') < 2: self.LV.top_dir = '' if self.cvars.verb > 2: print(' (top_dir not worth using...)') return 0
def set_directories(self): """decide on use of top_dir (use it or nothing - no anat_dir) ==> if top_dir is set, use $top_dir/short_names else just use anat and epi directly """ top_dir, parent_dirs, short_dirs, short_names = \ UTIL.common_parent_dirs([[self.uvars.anat, self.uvars.epi]]) self.LV.top_dir = parent_dirs[0] # common parent dir self.LV.short_names = short_names # if top_dir is used, they are under it if self.uvars.verb > 2: print('-- set_dirs: top_dir = %s\n' \ ' short_anat = %s\n' \ ' short_epi = %s\n' \ % (self.LV.top_dir, short_names[0][0], short_names[0][1])) # if top_dir isn't long enough, do not bother with it if self.LV.top_dir.count('/') < 2: self.LV.top_dir = '' if self.uvars.verb > 2: print(' (top_dir not worth using...)')