def Setup(self, collection_type):
self.collection_type = collection_type
try:
# get output directory
print "here 0"
chem_dir = self.director.GetBiochemicalFileDirectory()
# print "chem_dir: "+chem_dir
try:
os.makedirs(chem_dir)
except OSError as exc: # Python >2.5
if exc.errno == errno.EEXIST and os.path.isdir(chem_dir):
pass
else: raise
# open output files
if self.collection_type == "baseline":
chem_file_1_path = os.path.join(chem_dir,"baseline_chem_file_1")
else:
chem_file_1_path = os.path.join(chem_dir,"chem_file_1")
self.chem_file_1 = open(chem_file_1_path,"w")
# load configuration parameters into sensor
aController = AlgorithmController(self.db, Algorithm, None, None)
adController = AlgorithmDefaultsController(self.db, AlgorithmDefaults, None, None)
algorithm = aController.getByName("biochemical sensor")
# (names,values) = adController.getAllAsLists(algorithm.id)
# self.sensor.createConfiguration(names, values)
# self.sensor.configure()
nReps = int(adController.getDefaultByName("numberReps", algorithm.id))
print "Configuring biochemical sensor for %d repetitions" % (nReps)
self.sensor.configure(nReps)
except PUFileDirectorException as e:
self.message = e.to_string()
except pu.BiochemicalSensorException as e:
self.message = e.what()
except Exception as e:
print "Exception - ",e
self.message = e
def __init__(self, parent, db, mode="Add-Update-Delete"):
"""
Constructor which creates the modal dialog and its widgets, instantiates an
ObjectlistView and populates it with the results from a query containing all
database objects in a class.
Arguments:
parent - Parent window
db - Database connection object
mode - Dialog mode which can be either "Add-Update-Delete" or "Select"
"""
self.db = db
self.obj = Algorithm
self.objOlv = OlvAlgorithm
self.objOlvCols = OlvAlgorithmCols()
width = self.objOlvCols.getTotalColumnWidth()
wx.Dialog.__init__(self, parent, size=wx.Size(width,500))
self.controller = AlgorithmController(db, self.obj, self.objOlv, self.objOlvCols)
try:
self.results = self.controller.getAllRecords()
except:
self.results = []
font = wx.Font(12, wx.DEFAULT, wx.NORMAL, wx.BOLD)
lbl = wx.StaticText(self, label=self.obj.displayTableName)
lbl.SetFont(font)
mainSizer = wx.BoxSizer(wx.VERTICAL)
searchSizer = wx.BoxSizer(wx.HORIZONTAL)
btnSizer = wx.BoxSizer(wx.HORIZONTAL)
font = wx.Font(10, wx.SWISS, wx.NORMAL, wx.BOLD)
# create the search related widgets
searchByLbl = wx.StaticText(self, label="Search By:")
searchByLbl.SetFont(font)
searchSizer.Add(searchByLbl, 0, wx.ALL, 5)
self.search = wx.SearchCtrl(self, style=wx.TE_PROCESS_ENTER)
self.search.Bind(wx.EVT_TEXT_ENTER, self.onSearch)
searchSizer.Add(self.search, 0, wx.ALL, 5)
self.resultsOlv = ObjectListView(self, style=wx.LC_REPORT
|wx.SUNKEN_BORDER)
self.resultsOlv.SetEmptyListMsg("No Records Found")
self.setResultsOlv()
# create the button row
if mode == "Select-Only":
selectRecordBtn = wx.Button(self, label="Select")
selectRecordBtn.Bind(wx.EVT_BUTTON, self.onSelectRecord)
btnSizer.Add(selectRecordBtn, 0, wx.ALL, 5)
if mode == "Add-Update-Delete":
addRecordBtn = wx.Button(self, label="Add")
addRecordBtn.Bind(wx.EVT_BUTTON, self.onAddRecord)
btnSizer.Add(addRecordBtn, 0, wx.ALL, 5)
editRecordBtn = wx.Button(self, label="Edit")
editRecordBtn.Bind(wx.EVT_BUTTON, self.onEditRecord)
btnSizer.Add(editRecordBtn, 0, wx.ALL, 5)
deleteRecordBtn = wx.Button(self, label="Delete")
deleteRecordBtn.Bind(wx.EVT_BUTTON, self.onDelete)
btnSizer.Add(deleteRecordBtn, 0, wx.ALL, 5)
showAllBtn = wx.Button(self, label="Show All")
showAllBtn.Bind(wx.EVT_BUTTON, self.onShowAllRecord)
btnSizer.Add(showAllBtn, 0, wx.ALL, 5)
configBtn = wx.Button(self, label="Configuration")
configBtn.Bind(wx.EVT_BUTTON, self.onConfiguration)
btnSizer.Add(configBtn, 0, wx.ALL, 5)
experimentsBtn = wx.Button(self, label="Experiments")
experimentsBtn.Bind(wx.EVT_BUTTON, self.onExperiments)
btnSizer.Add(experimentsBtn, 0, wx.ALL, 5)
mainSizer.Add(lbl, 0, wx.CENTER)
mainSizer.Add(searchSizer)
mainSizer.Add(self.resultsOlv, 1, wx.ALL|wx.EXPAND, 5)
mainSizer.Add(btnSizer, 0, wx.CENTER)
self.SetSizer(mainSizer)
class AlgorithmDialog(wx.Dialog):
"""
This class implements the generic select/add/update/delete dialog for a database object.
It constructs the list of objects and places them in an ObjectListView widget.
It then implements the button handlers for calling the add_modify_dialog to add or modify
the object. Selection and deletion are handled in this dialog by calling the
olv_dialog_controller controller.
Methods:
__init__(parent, db, obj, objOlv, objOlvCols, mode) - creates the widgets in the panel and performs initialization
getSelectedObject() - Gets the selected object in the ObjectListView
onAddRecord(event) - Button handler to add a record to the database
onEditRecord(event) - Button handler to edit a record
onDeleteRecord(event) - Button handler to delete a record
onSearch(event) - Search field handler to search database based on the user's filter choice and keyword
onSelectRecord(event) - Button handler to select a record
onShowAllRecord(event) - Button handler to update the record list to show all of them
setResultsOlv() - Sets the columns and objects in the ObjectListView
showAllRecords() - Shows all records in the object list view control
"""
#----------------------------------------------------------------------
def __init__(self, parent, db, mode="Add-Update-Delete"):
"""
Constructor which creates the modal dialog and its widgets, instantiates an
ObjectlistView and populates it with the results from a query containing all
database objects in a class.
Arguments:
parent - Parent window
db - Database connection object
mode - Dialog mode which can be either "Add-Update-Delete" or "Select"
"""
self.db = db
self.obj = Algorithm
self.objOlv = OlvAlgorithm
self.objOlvCols = OlvAlgorithmCols()
width = self.objOlvCols.getTotalColumnWidth()
wx.Dialog.__init__(self, parent, size=wx.Size(width,500))
self.controller = AlgorithmController(db, self.obj, self.objOlv, self.objOlvCols)
try:
self.results = self.controller.getAllRecords()
except:
self.results = []
font = wx.Font(12, wx.DEFAULT, wx.NORMAL, wx.BOLD)
lbl = wx.StaticText(self, label=self.obj.displayTableName)
lbl.SetFont(font)
mainSizer = wx.BoxSizer(wx.VERTICAL)
searchSizer = wx.BoxSizer(wx.HORIZONTAL)
btnSizer = wx.BoxSizer(wx.HORIZONTAL)
font = wx.Font(10, wx.SWISS, wx.NORMAL, wx.BOLD)
# create the search related widgets
searchByLbl = wx.StaticText(self, label="Search By:")
searchByLbl.SetFont(font)
searchSizer.Add(searchByLbl, 0, wx.ALL, 5)
self.search = wx.SearchCtrl(self, style=wx.TE_PROCESS_ENTER)
self.search.Bind(wx.EVT_TEXT_ENTER, self.onSearch)
searchSizer.Add(self.search, 0, wx.ALL, 5)
self.resultsOlv = ObjectListView(self, style=wx.LC_REPORT
|wx.SUNKEN_BORDER)
self.resultsOlv.SetEmptyListMsg("No Records Found")
self.setResultsOlv()
# create the button row
if mode == "Select-Only":
selectRecordBtn = wx.Button(self, label="Select")
selectRecordBtn.Bind(wx.EVT_BUTTON, self.onSelectRecord)
btnSizer.Add(selectRecordBtn, 0, wx.ALL, 5)
if mode == "Add-Update-Delete":
addRecordBtn = wx.Button(self, label="Add")
addRecordBtn.Bind(wx.EVT_BUTTON, self.onAddRecord)
btnSizer.Add(addRecordBtn, 0, wx.ALL, 5)
editRecordBtn = wx.Button(self, label="Edit")
editRecordBtn.Bind(wx.EVT_BUTTON, self.onEditRecord)
btnSizer.Add(editRecordBtn, 0, wx.ALL, 5)
deleteRecordBtn = wx.Button(self, label="Delete")
deleteRecordBtn.Bind(wx.EVT_BUTTON, self.onDelete)
btnSizer.Add(deleteRecordBtn, 0, wx.ALL, 5)
showAllBtn = wx.Button(self, label="Show All")
showAllBtn.Bind(wx.EVT_BUTTON, self.onShowAllRecord)
btnSizer.Add(showAllBtn, 0, wx.ALL, 5)
configBtn = wx.Button(self, label="Configuration")
configBtn.Bind(wx.EVT_BUTTON, self.onConfiguration)
btnSizer.Add(configBtn, 0, wx.ALL, 5)
experimentsBtn = wx.Button(self, label="Experiments")
experimentsBtn.Bind(wx.EVT_BUTTON, self.onExperiments)
btnSizer.Add(experimentsBtn, 0, wx.ALL, 5)
mainSizer.Add(lbl, 0, wx.CENTER)
mainSizer.Add(searchSizer)
mainSizer.Add(self.resultsOlv, 1, wx.ALL|wx.EXPAND, 5)
mainSizer.Add(btnSizer, 0, wx.CENTER)
self.SetSizer(mainSizer)
# mainSizer.Fit(self)
#----------------------------------------------------------------------
def getSelectedObject(self):
"""
Gets the selected object in the ObjectListView
"""
return self.selectedObject
#----------------------------------------------------------------------
def onAddRecord(self, event):
"""
Button handler to add a record to the database
"""
dlg = add_modify_dialog.AddModifyDialog(self.controller, self.obj, title="Add", addRecord=True)
rc = dlg.ShowModal()
if rc == 0:
self.showAllRecords()
#----------------------------------------------------------------------
def onEditRecord(self, event):
"""
Button handler to edit a record
"""
selectedRow = self.resultsOlv.GetSelectedObject()
if selectedRow == None:
util.showMessageDialog("No row selected!", "Error")
return
dlg = add_modify_dialog.AddModifyDialog(self.controller, self.obj, row=selectedRow, title="Modify",
addRecord=False)
rc = dlg.ShowModal()
if rc == 0:
self.showAllRecords()
#----------------------------------------------------------------------
def onDelete(self, event):
"""
Button handler to delete a record
"""
selectedRow = self.resultsOlv.GetSelectedObject()
if selectedRow == None:
util.showMessageDialog("No row selected!", "Error")
return
(rc, msg) = self.controller.deleteRecord(selectedRow.getKey())
# Check return code from above and put up appropriate message dialog
if rc == 0:
util.showMessageDialog("Record Deleted Successfully!", "Success!", wx.ICON_INFORMATION)
else:
util.showMessageDialog(msg, "Failure!", wx.ICON_INFORMATION)
self.showAllRecords()
#----------------------------------------------------------------------
def onConfiguration(self, event):
"""
Button handler to show configuration parameters
"""
selectedRow = self.resultsOlv.GetSelectedObject()
if selectedRow == None:
util.showMessageDialog("No row selected!", "Error")
return
algorithmId = selectedRow.getKey()
olvDialog = AlgorithmDefaultsDialog(None, self.db, algorithmId)
rc = olvDialog.ShowModal()
olvDialog.Destroy()
self.Enable()
self.showAllRecords()
#----------------------------------------------------------------------
def onExperiments(self, event):
"""
Button handler to show experiments for an algorithm
"""
selectedRow = self.resultsOlv.GetSelectedObject()
if selectedRow == None:
util.showMessageDialog("No row selected!", "Error")
return
algorithmId = selectedRow.getKey()
olvDialog = ExperimentDialog(None, self.db, algorithmId=algorithmId)
rc = olvDialog.ShowModal()
olvDialog.Destroy()
self.Enable()
self.showAllRecords()
#----------------------------------------------------------------------
def onSearch(self, event):
"""
Search field handler to search database based on the user's filter choice and keyword
"""
keyword = self.search.GetValue()
Filter.TextSearch(self.resultsOlv,columns=(), text=keyword)
#----------------------------------------------------------------------
def onSelectRecord(self, event):
"""
Button handler to select a record
"""
selectedRow = self.resultsOlv.GetSelectedObject()
if selectedRow == None:
util.showMessageDialog("No row selected!", "Error")
return
key = selectedRow.getKey()
self.selectedObject = self.controller.getRecordByKey(key)
self.EndModal(0)
#----------------------------------------------------------------------
def onShowAllRecord(self, event):
"""
Button handler to update the record list to show all of them
"""
self.showAllRecords()
#----------------------------------------------------------------------
def setResultsOlv(self):
"""
Sets the columns and objects in the ObjectListView
"""
cd = self.objOlvCols.getColumnDefinitions()
# print len(cd)
self.resultsOlv.SetColumns(self.objOlvCols.getColumnDefinitions())
self.resultsOlv.SetObjects(self.results)
#----------------------------------------------------------------------
def showAllRecords(self):
"""
Shows all records in the object list view control
"""
self.results = self.controller.getAllRecords()
self.setResultsOlv()
def __init__(self, controller, obj, db, row=None, title="Add", addRecord=True, algorithmId=None):
"""
Initializes the add/modify dialog. This consists of constructing an input form
which has field names and a text field for entering field values.
Arguments:
controller - class performing the object creation, update, or deletion
obj - object class to be processed
row - row selected containing the object
title - title to be displayed on form
addRecord - flag indicating that a new record is to be created
"""
# set up controllers
algorithmController = AlgorithmController(db, Algorithm, None, None)
wx.Dialog.__init__(self, None, title="%s Experiment Record" % title)
self.controller = controller
if row:
key = row.getKey()
self.objInstance = controller.getRecordByKey(key)
if addRecord:
curAlgorithmtId = self.objInstance.algorithm_id
self.objInstance = obj()
self.objInstance.patient_id = curAlgorithmtId
else:
self.objInstance = obj()
self.objInstance.algorithm_id = algorithmId
self.addRecord = addRecord
self.selectedRow = row
size = (80, -1)
font = wx.Font(12, wx.DEFAULT, wx.NORMAL, wx.BOLD)
# create the sizers
mainSizer = wx.BoxSizer(wx.VERTICAL)
btnSizer = wx.BoxSizer(wx.HORIZONTAL)
# create some widgets
lbl = wx.StaticText(self, label=self.objInstance.displayTableName)
lbl.SetFont(font)
mainSizer.Add(lbl, 0, wx.CENTER)
font = wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD)
self.ctls = []
lbl = wx.StaticText(self, size=size)
lbl.SetLabel("Experiment Name:")
lbl.SetFont(font)
if row:
self.experimentTextCtrl = wx.TextCtrl(self, value=row.experiment_name)
else:
self.experimentTextCtrl = wx.TextCtrl(self, value="")
mainSizer.Add(self.rowBuilder([lbl, self.experimentTextCtrl]), 0, wx.EXPAND)
lbl = wx.StaticText(self, size=size)
lbl.SetLabel("Algorithm:")
lbl.SetFont(font)
self.algorithm_name = wx.ComboBox(self, wx.ID_ANY, choices=[], style=wx.CB_DROPDOWN | wx.CB_DROPDOWN)
self.algorithm_name.SetFont(font)
algorithms = algorithmController.getAll()
for s in algorithms:
self.algorithm_name.Append(s.algorithm_name, str(s.id))
if row:
n = 0
for s in algorithms:
if self.objInstance.algorithm_id == s.id:
self.algorithm_name.Select(n)
break
n = n + 1
else:
self.algorithm_name.Select(0)
mainSizer.Add(self.rowBuilder([lbl, self.algorithm_name]), 0, wx.EXPAND)
lbl = wx.StaticText(self, size=size)
lbl.SetLabel("Default?:")
lbl.SetFont(font)
self.defCheckbox = wx.CheckBox(self)
if row and not(self.addRecord) and self.objInstance.default_flag == 1:
self.defCheckbox.SetValue(True)
mainSizer.Add(self.rowBuilder([lbl, self.defCheckbox]), 0, wx.EXPAND)
lbl = wx.StaticText(self, size=size)
lbl.SetLabel("Description:")
lbl.SetFont(font)
if row and not(self.addRecord) and not(self.objInstance.experiment_description is None):
self.descTextCtrl = wx.TextCtrl(self, value=self.objInstance.experiment_description)
else:
self.descTextCtrl = wx.TextCtrl(self, value="")
mainSizer.Add(self.rowBuilder([lbl, self.descTextCtrl]), 0, wx.EXPAND)
okBtn = wx.Button(self, label="%s" % title)
okBtn.Bind(wx.EVT_BUTTON, self.onRecord)
btnSizer.Add(okBtn, 0, wx.ALL, 5)
cancelBtn = wx.Button(self, label="Close")
cancelBtn.Bind(wx.EVT_BUTTON, self.onClose)
btnSizer.Add(cancelBtn, 0, wx.ALL, 5)
mainSizer.Add(btnSizer, 0, wx.CENTER)
self.SetSizer(mainSizer)
self.Refresh()