def build_manifest(self, file_name):
"""
Construct a manifest for this Cache class and save it in a file.
Parameters
----------
file_name: string
File location to save the manifest.
"""
mb = ManifestBuilder()
mb.set_version(self.MANIFEST_VERSION)
mb.add_path('BASEDIR', '.')
mb.add_path(self.EXPERIMENT_CONTAINERS_KEY,
'experiment_containers.json', typename='file', parent_key='BASEDIR')
mb.add_path(self.EXPERIMENTS_KEY, 'ophys_experiments.json',
typename='file', parent_key='BASEDIR')
mb.add_path(self.EXPERIMENT_DATA_KEY, 'ophys_experiment_data/%d.nwb',
typename='file', parent_key='BASEDIR')
mb.add_path(self.ANALYSIS_DATA_KEY, 'ophys_experiment_analysis/%d_%s_analysis.h5',
typename='file', parent_key='BASEDIR')
mb.add_path(self.EVENTS_DATA_KEY, 'ophys_experiment_events/%d_events.npz',
typename='file', parent_key='BASEDIR')
mb.add_path(self.CELL_SPECIMENS_KEY, 'cell_specimens.json',
typename='file', parent_key='BASEDIR')
mb.add_path(self.STIMULUS_MAPPINGS_KEY, 'stimulus_mappings.json',
typename='file', parent_key='BASEDIR')
mb.write_json_file(file_name)
def build_manifest(self, file_name):
"""
Construct a manifest for this Cache class and save it in a file.
Parameters
----------
file_name: string
File location to save the manifest.
"""
mb = ManifestBuilder()
mb.set_version(self.MANIFEST_VERSION)
mb.add_path('BASEDIR', '.')
mb.add_path(self.CELLS_KEY, 'cells.json',
typename='file', parent_key='BASEDIR')
mb.add_path(self.EPHYS_DATA_KEY, 'specimen_%d/ephys.nwb',
typename='file', parent_key='BASEDIR')
mb.add_path(self.EPHYS_FEATURES_KEY, 'ephys_features.csv',
typename='file', parent_key='BASEDIR')
mb.add_path(self.MORPHOLOGY_FEATURES_KEY, 'morphology_features.csv',
typename='file', parent_key='BASEDIR')
mb.add_path(self.RECONSTRUCTION_KEY, 'specimen_%d/reconstruction.swc',
typename='file', parent_key='BASEDIR')
mb.add_path(self.MARKER_KEY, 'specimen_%d/reconstruction.marker',
typename='file', parent_key='BASEDIR')
mb.add_path(self.EPHYS_SWEEPS_KEY, 'specimen_%d/ephys_sweeps.json',
typename='file', parent_key='BASEDIR')
mb.write_json_file(file_name)
def build_manifest(self, file_name):
"""
Construct a manifest for this Cache class and save it in a file.
Parameters
----------
file_name: string
File location to save the manifest.
"""
mb = ManifestBuilder()
mb.set_version(self.MANIFEST_VERSION)
mb.add_path('BASEDIR', '.')
mb.add_path(self.EXPERIMENT_CONTAINERS_KEY,
'experiment_containers.json',
typename='file',
parent_key='BASEDIR')
mb.add_path(self.EXPERIMENTS_KEY,
'ophys_experiments.json',
typename='file',
parent_key='BASEDIR')
mb.add_path(self.EXPERIMENT_DATA_KEY,
'ophys_experiment_data/%d.nwb',
typename='file',
parent_key='BASEDIR')
mb.add_path(self.ANALYSIS_DATA_KEY,
'ophys_experiment_analysis/%d_%s_analysis.h5',
typename='file',
parent_key='BASEDIR')
mb.add_path(self.EVENTS_DATA_KEY,
'ophys_experiment_events/%d_events.npz',
typename='file',
parent_key='BASEDIR')
mb.add_path(self.CELL_SPECIMENS_KEY,
'cell_specimens.json',
typename='file',
parent_key='BASEDIR')
mb.add_path(self.STIMULUS_MAPPINGS_KEY,
'stimulus_mappings.json',
typename='file',
parent_key='BASEDIR')
mb.add_path(
self.EYE_GAZE_DATA_KEY,
'ophys_eye_gaze_mapping/%d_eyetracking_dlc_to_screen_mapping.h5',
typename='file',
parent_key='BASEDIR')
mb.write_json_file(file_name)
def build_manifest(self, file_name):
'''Creation of default path specifications.
Parameters
----------
file_name : string
where to save it
'''
manifest_builder = ManifestBuilder()
manifest_builder.set_version(self.MANIFEST_VERSION)
manifest_builder = self.add_manifest_paths(manifest_builder)
manifest_builder.write_json_file(file_name)
def build_manifest(self, file_name):
'''Creation of default path specifications.
Parameters
----------
file_name : string
where to save it
'''
manifest_builder = ManifestBuilder()
manifest_builder.set_version(self.MANIFEST_VERSION)
manifest_builder = self.add_manifest_paths(manifest_builder)
manifest_builder.write_json_file(file_name)
def build_manifest(self, file_name):
"""
Construct a manifest for this Cache class and save it in a file.
Parameters
----------
file_name: string
File location to save the manifest.
"""
mb = ManifestBuilder()
mb.set_version(self.MANIFEST_VERSION)
mb.add_path('BASEDIR', '.')
mb.add_path(self.CELLS_KEY,
'cells.json',
typename='file',
parent_key='BASEDIR')
mb.add_path(self.EPHYS_DATA_KEY,
'specimen_%d/ephys.nwb',
typename='file',
parent_key='BASEDIR')
mb.add_path(self.EPHYS_FEATURES_KEY,
'ephys_features.csv',
typename='file',
parent_key='BASEDIR')
mb.add_path(self.MORPHOLOGY_FEATURES_KEY,
'morphology_features.csv',
typename='file',
parent_key='BASEDIR')
mb.add_path(self.RECONSTRUCTION_KEY,
'specimen_%d/reconstruction.swc',
typename='file',
parent_key='BASEDIR')
mb.add_path(self.MARKER_KEY,
'specimen_%d/reconstruction.marker',
typename='file',
parent_key='BASEDIR')
mb.add_path(self.EPHYS_SWEEPS_KEY,
'specimen_%d/ephys_sweeps.json',
typename='file',
parent_key='BASEDIR')
mb.write_json_file(file_name)
def build_manifest(self, file_name):
manifest_builder = ManifestBuilder()
manifest_builder.set_version(DummyCache.VERSION)
manifest_builder.write_json_file(file_name)
