def test_external_documentation_fields_values(self):
""" Test Top.external_documentation group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.external_documentation.any_field.url = 'http://example.com'
top.external_documentation.any_field.title = 'the-title'
top.external_documentation.any_field.description = 'the-description'
top.external_documentation.any_field.source = 'http://example.com'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(
new_top.external_documentation.any_field.url,
'http://example.com')
self.assertEqual(
new_top.external_documentation.any_field.title,
'the-title')
self.assertEqual(
new_top.external_documentation.any_field.description,
'the-description')
self.assertEqual(
new_top.external_documentation.any_field.source,
'http://example.com')
def test_identity_fields_values(self):
""" Test contacts group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.identity.bspace = 'b-space'
top.identity.btime = 'b-time'
top.identity.dataset = dataset.vid
top.identity.id = dataset.id
top.identity.revision = 7
top.identity.source = 'example.com'
top.identity.subset = 'mortality'
top.identity.type = '?'
top.identity.variation = 1
top.identity.version = '0.0.7'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.identity.bspace, 'b-space')
self.assertEqual(new_top.identity.btime, 'b-time')
self.assertEqual(new_top.identity.dataset, dataset.vid)
self.assertEqual(new_top.identity.id, dataset.id)
self.assertEqual(new_top.identity.revision, 7)
self.assertEqual(new_top.identity.source, 'example.com')
self.assertEqual(new_top.identity.subset, 'mortality')
self.assertEqual(new_top.identity.type, '?')
self.assertEqual(new_top.identity.variation, 1)
self.assertEqual(new_top.identity.version, '0.0.7')
def test_identity_fields_values(self):
""" Test contacts group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.identity.bspace = 'b-space'
top.identity.btime = 'b-time'
top.identity.dataset = dataset.vid
top.identity.id = dataset.id
top.identity.revision = 7
top.identity.source = 'example.com'
top.identity.subset = 'mortality'
top.identity.type = '?'
top.identity.variation = 1
top.identity.version = '0.0.7'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.identity.bspace, 'b-space')
self.assertEqual(new_top.identity.btime, 'b-time')
self.assertEqual(new_top.identity.dataset, dataset.vid)
self.assertEqual(new_top.identity.id, dataset.id)
self.assertEqual(new_top.identity.revision, 7)
self.assertEqual(new_top.identity.source, 'example.com')
self.assertEqual(new_top.identity.subset, 'mortality')
self.assertEqual(new_top.identity.type, '?')
self.assertEqual(new_top.identity.variation, 1)
self.assertEqual(new_top.identity.version, '0.0.7')
def test_uses_exactly_two_db_hits_to_build_config(self):
# create appropriate tree in the database
configs = [
('names.fqname', self.dataset.fqname),
('names.name', self.dataset.name),
('names.vid', self.dataset.vid),
('names.vname', self.dataset.vname),
# about
('about.access', 'restricted'),
('about.footnote', None),
('about.grain', 'hospital')
]
self._create_db_tree(configs)
# now collect all queries
queries = []
def before_cursor_execute(conn, cursor, statement, parameters, context,
executemany):
queries.append((statement, parameters))
event.listen(self.db.engine, 'before_cursor_execute',
before_cursor_execute)
# build from db
top = Top()
top.build_from_db(self.dataset)
expected_queries = [
'dataset retrieve', 'all configs retrieve while cache building'
]
self.assertEqual(len(expected_queries), len(queries))
def test_build_tree_from_database(self):
""" Populates property tree with values from database. """
# create appropriate tree in the database
self._create_db_tree()
# build from db
top = Top()
top.build_from_db(self.dataset)
self.assertEqual(top.names.vid, self.dataset.vid)
def test_build_tree_from_database(self):
""" Populates property tree with values from database. """
# create appropriate tree in the database
self._create_db_tree()
# build from db
top = Top()
top.build_from_db(self.dataset)
self.assertEqual(top.names.vid, self.dataset.vid)
def test_change_tree_build_from_database(self):
# create appropriate tree in the database
self._create_db_tree()
# build from db
top = Top()
top.build_from_db(self.dataset)
# change and test
assert top.is_bound()
vid_value_config = self.db.session.query(Config).filter_by(key='vid', type='metadata').one()
self.assertNotEqual(vid_value_config.value, 'vid-2')
top.names.vid = 'vid-2'
vid_value_config = self.db.session.query(Config).filter_by(key='vid', type='metadata').one()
self.assertEqual(vid_value_config.value, 'vid-2')
def test_build_fields_values(self):
""" Test Top().build group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.build.key1 = 'value1'
top.build.key2 = 'value2'
top.build.key3 = 'value3'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.build.key1, 'value1')
self.assertEqual(new_top.build.key2, 'value2')
self.assertEqual(new_top.build.key3, 'value3')
def test_requirements_fields_values(self):
""" Test Top.requirements group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.requirements.xlrd = 'xlrd'
top.requirements.requests = 'requests'
top.requirements.suds = 'suds'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.requirements.xlrd, 'xlrd')
self.assertEqual(new_top.requirements.requests, 'requests')
self.assertEqual(new_top.requirements.suds, 'suds')
def test_versions_fields_values(self):
""" Test Top().versions group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.versions['1'].date = '2015-04-12T15:49:55.077036'
top.versions['1'].description = 'Adding coverage'
top.versions['1'].version = '0.0.2'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.versions['1'].date, '2015-04-12T15:49:55.077036')
self.assertEqual(new_top.versions['1'].description, 'Adding coverage')
self.assertEqual(new_top.versions['1'].version, '0.0.2')
def test_change_tree_build_from_database(self):
# create appropriate tree in the database
self._create_db_tree()
# build from db
top = Top()
top.build_from_db(self.dataset)
# change and test
assert top.is_bound()
vid_value_config = self.db.session.query(Config).filter_by(
key='vid', type='metadata').one()
self.assertNotEqual(vid_value_config.value, 'vid-2')
top.names.vid = 'vid-2'
vid_value_config = self.db.session.query(Config).filter_by(
key='vid', type='metadata').one()
self.assertEqual(vid_value_config.value, 'vid-2')
def test_versions_fields_values(self):
""" Test Top().versions group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.versions['1'].date = '2015-04-12T15:49:55.077036'
top.versions['1'].description = 'Adding coverage'
top.versions['1'].version = '0.0.2'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.versions['1'].date,
'2015-04-12T15:49:55.077036')
self.assertEqual(new_top.versions['1'].description, 'Adding coverage')
self.assertEqual(new_top.versions['1'].version, '0.0.2')
def test_names_fields_values(self):
""" Test Top().names group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.names.fqname = 'fq-name'
top.names.name = 'name'
top.names.vid = 'd001'
top.names.vname = 'vname'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.names.fqname, 'fq-name')
self.assertEqual(new_top.names.name, 'name')
self.assertEqual(new_top.names.vid, 'd001')
self.assertEqual(new_top.names.vname, 'vname')
def test_names_fields_values(self):
""" Test Top().names group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.names.fqname = 'fq-name'
top.names.name = 'name'
top.names.vid = 'd001'
top.names.vname = 'vname'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.names.fqname, 'fq-name')
self.assertEqual(new_top.names.name, 'name')
self.assertEqual(new_top.names.vid, 'd001')
self.assertEqual(new_top.names.vname, 'vname')
def test_about_group_fields_values(self):
""" Test about group fields values. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.about.access = 'restricted'
top.about.footnote = 'the-footnote'
top.about.grain = 'hospital'
top.about.groups = ['health', 'california']
top.about.license = 'ckdbl'
top.about.processed = 'processed'
top.about.rights = 'public'
top.about.source = 'http://example.com'
top.about.space = 'California'
top.about.subject = 'Subject'
top.about.summary = 'The Inpatient Mortality Indicators (IMIs) are a subset of...'
top.about.tags = ['tag1', 'tag2']
top.about.time = '15:55' # TODO: How to convert time? ESB: You don't; it's usually an ISO duration, or integer year.
top.about.title = 'Inpatient Mortality Indicators'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.about.access, 'restricted')
self.assertEqual(new_top.about.footnote, 'the-footnote')
self.assertEqual(new_top.about.grain, 'hospital')
self.assertEqual(new_top.about.groups, ['health', 'california'])
self.assertEqual(new_top.about.license, 'ckdbl')
self.assertEqual(new_top.about.processed, 'processed')
self.assertEqual(new_top.about.rights, 'public')
self.assertEqual(new_top.about.source, 'http://example.com')
self.assertEqual(new_top.about.space, 'California')
self.assertEqual(new_top.about.subject, 'Subject')
self.assertEqual(
new_top.about.summary,
'The Inpatient Mortality Indicators (IMIs) are a subset of...')
self.assertEqual(new_top.about.tags, ['tag1', 'tag2'])
self.assertEqual(new_top.about.time,
'15:55') # TODO: How to convert time?
self.assertEqual(new_top.about.title, 'Inpatient Mortality Indicators')
def test_about_group_fields_values(self):
""" Test about group fields values. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.about.access = 'restricted'
top.about.footnote = 'the-footnote'
top.about.grain = 'hospital'
top.about.groups = ['health', 'california']
top.about.license = 'ckdbl'
top.about.processed = 'processed'
top.about.rights = 'public'
top.about.source = 'http://example.com'
top.about.space = 'California'
top.about.subject = 'Subject'
top.about.summary = 'The Inpatient Mortality Indicators (IMIs) are a subset of...'
top.about.tags = ['tag1', 'tag2']
top.about.time = '15:55' # TODO: How to convert time? ESB: You don't; it's usually an ISO duration, or integer year.
top.about.title = 'Inpatient Mortality Indicators'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.about.access, 'restricted')
self.assertEqual(new_top.about.footnote, 'the-footnote')
self.assertEqual(new_top.about.grain, 'hospital')
self.assertEqual(new_top.about.groups, ['health', 'california'])
self.assertEqual(new_top.about.license, 'ckdbl')
self.assertEqual(new_top.about.processed, 'processed')
self.assertEqual(new_top.about.rights, 'public')
self.assertEqual(new_top.about.source, 'http://example.com')
self.assertEqual(new_top.about.space, 'California')
self.assertEqual(new_top.about.subject, 'Subject')
self.assertEqual(
new_top.about.summary,
'The Inpatient Mortality Indicators (IMIs) are a subset of...')
self.assertEqual(new_top.about.tags, ['tag1', 'tag2'])
self.assertEqual(new_top.about.time, '15:55') # TODO: How to convert time?
self.assertEqual(new_top.about.title, 'Inpatient Mortality Indicators')
def test_dependencies_fields_values(self):
""" Test Top.dependencies group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.dependencies.counties = 'census.gov-index-counties'
top.dependencies.facility_index = 'oshpd.ca.gov-facilities-index-facilities_index-2010e2014'
top.dependencies.facility_info = 'oshpd.ca.gov-facilities-index-facilities'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.dependencies.counties,
'census.gov-index-counties')
self.assertEqual(
new_top.dependencies.facility_index,
'oshpd.ca.gov-facilities-index-facilities_index-2010e2014')
self.assertEqual(new_top.dependencies.facility_info,
'oshpd.ca.gov-facilities-index-facilities')
def test_contacts_fields_values(self):
""" Test contacts group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.contacts.creator.role = 'c-developer'
top.contacts.creator.org = 'c-home'
top.contacts.creator.email = '*****@*****.**'
top.contacts.creator.name = 'c-tester'
top.contacts.creator.url = 'http://creator.example.com'
# FIXME: Populate maintainer, source and analyst too.
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.contacts.creator.role, 'c-developer')
self.assertEqual(new_top.contacts.creator.org, 'c-home')
self.assertEqual(new_top.contacts.creator.email, '*****@*****.**')
self.assertEqual(new_top.contacts.creator.name, 'c-tester')
self.assertEqual(new_top.contacts.creator.url, 'http://creator.example.com')
def test_dependencies_fields_values(self):
""" Test Top.dependencies group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.dependencies.counties = 'census.gov-index-counties'
top.dependencies.facility_index = 'oshpd.ca.gov-facilities-index-facilities_index-2010e2014'
top.dependencies.facility_info = 'oshpd.ca.gov-facilities-index-facilities'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(
new_top.dependencies.counties,
'census.gov-index-counties')
self.assertEqual(
new_top.dependencies.facility_index,
'oshpd.ca.gov-facilities-index-facilities_index-2010e2014')
self.assertEqual(
new_top.dependencies.facility_info,
'oshpd.ca.gov-facilities-index-facilities')
def test_build_fields_values(self):
""" Test Top().build group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.build.key1 = 'value1'
top.build.key2 = 'value2'
top.build.key3 = 'value3'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(
new_top.build.key1,
'value1')
self.assertEqual(
new_top.build.key2,
'value2')
self.assertEqual(
new_top.build.key3,
'value3')
def test_contacts_fields_values(self):
""" Test contacts group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.contacts.creator.role = 'c-developer'
top.contacts.creator.org = 'c-home'
top.contacts.creator.email = '*****@*****.**'
top.contacts.creator.name = 'c-tester'
top.contacts.creator.url = 'http://creator.example.com'
# FIXME: Populate maintainer, source and analyst too.
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.contacts.creator.role, 'c-developer')
self.assertEqual(new_top.contacts.creator.org, 'c-home')
self.assertEqual(new_top.contacts.creator.email, '*****@*****.**')
self.assertEqual(new_top.contacts.creator.name, 'c-tester')
self.assertEqual(new_top.contacts.creator.url,
'http://creator.example.com')
def test_requirements_fields_values(self):
""" Test Top.requirements group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.requirements.xlrd = 'xlrd'
top.requirements.requests = 'requests'
top.requirements.suds = 'suds'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(
new_top.requirements.xlrd,
'xlrd')
self.assertEqual(
new_top.requirements.requests,
'requests')
self.assertEqual(
new_top.requirements.suds,
'suds')
def test_external_documentation_fields_values(self):
""" Test Top.external_documentation group fields of the metadata config. """
# Test both - setting and saving to db.
top = Top()
dataset = DatasetFactory()
top.link_config(self.my_library.database.session, dataset)
top.external_documentation.any_field.url = 'http://example.com'
top.external_documentation.any_field.title = 'the-title'
top.external_documentation.any_field.description = 'the-description'
top.external_documentation.any_field.source = 'http://example.com'
# build from db and check
new_top = Top()
new_top.build_from_db(dataset)
self.assertEqual(new_top.external_documentation.any_field.url,
'http://example.com')
self.assertEqual(new_top.external_documentation.any_field.title,
'the-title')
self.assertEqual(new_top.external_documentation.any_field.description,
'the-description')
self.assertEqual(new_top.external_documentation.any_field.source,
'http://example.com')
def metadata(self):
"""Access process configuarion values as attributes. """
from ambry.metadata.schema import Top # cross-module import
top = Top()
top.build_from_db(self.dataset)
return top
