def split(rawfolder, file_contains='LDE', print_status=False, *arg, **kw):
windows = kw.pop('windows', [1, 2])
ch0maxtime = kw.pop('ch0maxtime', 700)
ch1maxtime = kw.pop('ch1maxtime', 700)
allfiles = [ f for f in os.listdir(rawfolder) if file_contains in f and \
f[:1] != '.' and f[-4:] == '.npz' ]
lastidx = len(allfiles)
# we don't have too much data left over, so can use this approach
finaldata = np.zeros((0, 4), dtype=np.uint)
windowdata = [np.zeros((0, 4), dtype=np.uint) for w in windows]
sync_of = 0
for i, f in enumerate(allfiles):
if print_status:
print 'file %d (%d) ...' % (i + 1, len(allfiles))
fp = os.path.join(rawfolder, f)
data = hht3.data_from_file(fp,
ch0_lastbin=ch0maxtime,
ch1_lastbin=ch1maxtime,
*arg,
**kw)
if len(data) == 0:
continue
data[:, 0] += sync_of + 100
sync_of = data[-1, 0] + 1
data = hht3.filter_counts_on_marker(data, 1, windows)
if len(data) == 0:
continue
_windowdata = []
for w in windows:
_wd = hht3.filter_counts_on_marker(data, 1, [w])
_wd = hht3.delete_markers(_wd, 1)
_windowdata.append(_wd)
data = hht3.delete_markers(data, 1)
finaldata = np.vstack((finaldata, data))
for i, w in enumerate(windows):
windowdata[i] = np.vstack((windowdata[i], _windowdata[i]))
ret = [finaldata]
ret.extend(windowdata)
return tuple(ret)
def split(rawfolder, file_contains='LDE', print_status=False, *arg, **kw):
windows = kw.pop('windows', [1,2])
ch0maxtime = kw.pop('ch0maxtime', 700)
ch1maxtime = kw.pop('ch1maxtime', 700)
allfiles = [ f for f in os.listdir(rawfolder) if file_contains in f and \
f[:1] != '.' and f[-4:] == '.npz' ]
lastidx = len(allfiles)
# we don't have too much data left over, so can use this approach
finaldata = np.zeros((0,4), dtype=np.uint)
windowdata = [ np.zeros((0,4), dtype=np.uint) for w in windows ]
sync_of = 0
for i,f in enumerate(allfiles):
if print_status:
print 'file %d (%d) ...' % (i+1, len(allfiles))
fp = os.path.join(rawfolder, f)
data = hht3.data_from_file(fp, ch0_lastbin=ch0maxtime,
ch1_lastbin=ch1maxtime, *arg, **kw)
if len(data) == 0:
continue
data[:,0] += sync_of + 100
sync_of = data[-1,0] + 1
data = hht3.filter_counts_on_marker(data, 1, windows)
if len(data) == 0:
continue
_windowdata = []
for w in windows:
_wd = hht3.filter_counts_on_marker(data, 1, [w])
_wd = hht3.delete_markers(_wd,1)
_windowdata.append(_wd)
data = hht3.delete_markers(data, 1)
finaldata = np.vstack((finaldata, data))
for i,w in enumerate(windows):
windowdata[i] = np.vstack((windowdata[i], _windowdata[i]))
ret = [finaldata]
ret.extend(windowdata)
return tuple(ret)
def filter_markers(data, sync_range=range(1,301), delete=True):
data = hht3.filter_counts_on_marker(data, 1, sync_range)
if len(data) > 0 and delete:
print 'delete markers'
data = hht3.delete_markers(data, 1)
return data
def filter_markers(data, sync_range=range(1,301), delete=True):
data = hht3.filter_counts_on_marker(data, 1, sync_range)
if len(data) > 0 and delete:
print 'delete markers'
data = hht3.delete_markers(data, 1)
return data