#Write C-C expansion writeCCDistances(checkedList) print 'CCdist', os.getcwd() #Check convergence writeConverge(checkedList) print 'converge', os.getcwd() #number of relaxation steps writeSteps(checkedList) print 'writeSteps', os.getcwd() ################# summary spreadsheet ################# #Open data files os.chdir(dir) file = open('elements','r') elements = nstrip(file.readlines()) file.close() print elements file = open('energies','r') energies = nstrip(file.readlines()) file.close() file = open('distances','r') distances = nstrip(file.readlines()) file.close() file = open('ccdistances','r') ccdistances = nstrip(file.readlines()) file.close()
'Rh', 'Pd', 'Hf', 'Ta', 'W', 'Re', 'Os', 'Ir', 'Pt' ] for elem in tableorder: for path in checkedList: if elem in path: tablelist.append(path) collate_plots(tablelist, 'dos.png', 'dos.png') ################# summary spreadsheet ################# #Open data files os.chdir(dir) file = open('elements', 'r') elements = nstrip(file.readlines()) file.close() print elements file = open('energies', 'r') energies = nstrip(file.readlines()) file.close() file = open('distances', 'r') distances = nstrip(file.readlines()) file.close() file = open('ccdistances', 'r') ccdistances = nstrip(file.readlines()) file.close()
#Check number of electronic steps writeElSteps(checkedList) #Check Vasp finish writeFinish(checkedList) #Check Number of electronic steps finish writeElConverge(checkedList) ################# spreadsheet ################# #Open data files os.chdir(dir) outfile = open('isolated_atoms.csv', 'w') file = open('elements', 'r') elements = nstrip(file.readlines()) file.close() file = open('energies', 'r') energies = nstrip(file.readlines()) file.close() file = open('elsteps', 'r') elsteps = nstrip(file.readlines()) file.close() file = open('elconverge', 'r') elconverge = nstrip(file.readlines()) file.close() file = open('finish', 'r')
#Check number of electronic steps writeElSteps(checkedList) #Check Vasp finish writeFinish(checkedList) #Check Number of electronic steps finish writeElConverge(checkedList) ################# spreadsheet ################# #Open data files os.chdir(dir) outfile = open('isolated_atoms.csv','w') file = open('elements','r') elements = nstrip(file.readlines()) file.close() file = open('energies','r') energies = nstrip(file.readlines()) file.close() file = open('elsteps','r') elsteps = nstrip(file.readlines()) file.close() file = open('elconverge','r') elconverge = nstrip(file.readlines()) file.close() file = open('finish','r')