def test_Read_ExportElan_Read(self):
tg1 = Antx()
tg1.read(os.path.join(SAMPLES, "Example_with_TGA.antx"))
annotationdata.io.write( os.path.join(SAMPLES, "Example.eaf"), tg1 )
tg2 = Elan()
tg2.read(os.path.join(SAMPLES, "Example.eaf"))
os.remove( os.path.join(SAMPLES, "Example.eaf") )
def test_Read_Write_Read(self):
tg1 = Elan()
tg2 = Elan()
tg1.read(os.path.join(SAMPLES,"sample.eaf"))
tg1.write(os.path.join(SAMPLES,"sample2.eaf"))
tg2.read(os.path.join(SAMPLES,"sample2.eaf"))
# Compare annotations of tg1 and tg2
for t1, t2 in zip(tg1, tg2):
self.assertEqual(t1.GetSize(), t2.GetSize())
self.assertEqual(t1.GetName(), t2.GetName())
for a1, a2 in zip(t1, t2):
self.assertEqual(a1.GetLabel().GetValue(), a2.GetLabel().GetValue())
self.assertEqual(a1.GetLocation().GetBegin(), a2.GetLocation().GetBegin())
self.assertEqual(a1.GetLocation().GetEnd(), a2.GetLocation().GetEnd())
# Compare media
# Compare controlled vocabularies
for t1, t2 in zip(tg1, tg2):
ctrl1 = t1.GetCtrlVocab() # a CtrlVocab() instance or None
ctrl2 = t2.GetCtrlVocab() # a CtrlVocab() instance or None
if ctrl1 is None and ctrl2 is None:
continue
self.assertEqual(ctrl1.GetSize(), ctrl2.GetSize())
for entry in ctrl1:
self.assertTrue(ctrl2.Contains(entry.Text))
os.remove( os.path.join(SAMPLES, "sample2.eaf") )
def test_Import_XRA(self):
tg1 = annotationdata.io.read(os.path.join(XRADEF, "sample-1.2.xra"))
annotationdata.io.write(os.path.join(SAMPLES,"sample-1.2.eaf"),tg1)
tg2 = Elan()
tg2.read(os.path.join(SAMPLES, "sample-1.2.eaf"))
annotationdata.io.write(os.path.join(SAMPLES,"sample-1.2.xra"),tg2)
# Compare annotations of tg1 and tg2
for t1, t2 in zip(tg1, tg2):
self.assertEqual(t1.GetSize(), t2.GetSize())
self.assertEqual(t1.GetName(), t2.GetName())
for a1, a2 in zip(t1, t2):
self.assertEqual(a1.GetLabel().GetValue(), a2.GetLabel().GetValue())
if t1.IsInterval():
self.assertEqual(a1.GetLocation().GetBegin(), a2.GetLocation().GetBegin())
self.assertEqual(a1.GetLocation().GetEnd(), a2.GetLocation().GetEnd())
else:
# Elan uses milliseconds.
# ELAN radius is 0.02 seconds
p = round( a1.GetLocation().GetPoint().GetMidpoint()-0.02, 3)
self.assertEqual(p, round(a2.GetLocation().GetBegin().GetMidpoint(),3))
os.remove( os.path.join(SAMPLES, "sample-1.2.xra") )
os.remove( os.path.join(SAMPLES, "sample-1.2.eaf") )