def add_to_record(self, record: Record) -> None: db_version = pfamdb.get_db_version_from_path(self.database) for i, hit in enumerate(self.hits): protein_location = FeatureLocation(hit["protein_start"], hit["protein_end"]) pfam_feature = PFAMDomain(location_from_string(hit["location"]), description=hit["description"], protein_location=protein_location, identifier=hit["identifier"], tool=self.tool, locus_tag=hit["locus_tag"]) for key in ["label", "locus_tag", "domain", "evalue", "score", "translation"]: setattr(pfam_feature, key, hit[key]) pfam_feature.database = db_version pfam_feature.detection = "hmmscan" pfam_feature.domain_id = "{}_{}_{:04d}".format(self.tool, pfam_feature.locus_tag, i + 1) record.add_pfam_domain(pfam_feature)
def add_to_record(self, record: Record) -> None: """ Adds the hits as PFAMDomains to the given record """ db_version = pfamdb.get_db_version_from_path(self.database) for i, hit in enumerate(self.hits): protein_location = FeatureLocation(hit.protein_start, hit.protein_end) pfam_feature = PFAMDomain(location_from_string(hit.location), description=hit.description, protein_location=protein_location, identifier=hit.identifier, tool=self.tool, locus_tag=hit.locus_tag) for key in ["label", "locus_tag", "domain", "evalue", "score", "translation"]: setattr(pfam_feature, key, getattr(hit, key)) pfam_feature.database = db_version pfam_feature.detection = "hmmscan" pfam_feature.domain_id = "{}_{}_{:04d}".format(self.tool, pfam_feature.locus_tag, i + 1) record.add_pfam_domain(pfam_feature)