def test_predict_cleavage_site(self):
with patch.object(subprocessing, "run_hmmpfam2", return_value=[]):
assert predict_cleavage_site('foo', 'bar') is None
fake_hit = FakeHit(24, 42, 17, 'fake')
with patch.object(subprocessing, "run_hmmpfam2", return_value=[[fake_hit]]):
res = predict_cleavage_site('foo', 'bar')
self.assertEqual(42, res.end)
self.assertEqual(17, res.score)
self.assertEqual('fake', res.lantype)
def test_predict_cleavage_site(self, mocked_run):
"Test thiopeptides.predict_cleavage_site()"
resvec = predict_cleavage_site('foo', 'bar', 51)
assert resvec == (None, 0.)
fake_hit = FakeHit(24, 42, 17, 'fake')
mocked_run.return_value = [[fake_hit]]
end, score = predict_cleavage_site('foo', 'bar', 15)
self.assertEqual(28, end)
self.assertEqual(17, score)
def test_predict_cleavage_site(self):
"Test lanthipeptides.predict_cleavage_site()"
resvec = predict_cleavage_site('foo', 'bar')
self.assertEqual(None, resvec)
fake_hit = FakeHit(24, 42, 17, 'fake')
self.hmmpfam_return_vals.append([fake_hit])
res = predict_cleavage_site('foo', 'bar')
self.assertEqual(42, res.end)
self.assertEqual(17, res.score)
self.assertEqual('fake', res.lantype)
def test_predict_cleavage_site(self):
"Test thiopeptides.predict_cleavage_site()"
resvec = predict_cleavage_site('foo', 'bar', 51)
assert resvec == (None, 0.)
fake_hit = FakeHit(24, 42, 17, 'fake')
self.hmmpfam_return_vals.append([fake_hit])
end, score = predict_cleavage_site('foo', 'bar', 15)
self.assertEqual(28, end)
self.assertEqual(17, score)