def process_formulary(pricetable_persist_path, formulary_md_path, output_filename_list, screen_output, verbose_debug=False):
# Load updated pricetable
pricetable = read_pricetable(pricetable_persist_path)
# Processing formulary
print('\nProcessing Formulary Markdown...')
formularylist = fh.read_md(str(formulary_md_path))
formularyparsed = fh.parse_mddata(formularylist)
print('Number of EHHapp formulary medications: {}'.format(len(formularyparsed)))
screen_output.append(['Number of EHHapp formulary medications',len(formularyparsed)])
if verbose_debug:
print('Extracted Formulary Entries:')
print(formularyparsed[0])
for i in range(0,4):
print('from Formulary: NAME:{} DOSECOST:{}'.format(fh.FormularyRecord(formularyparsed[i]).NAME,
fh.FormularyRecord(formularyparsed[i]).DOSECOST))
formulary = fh.store_formulary(formularyparsed)
# Updating Formulary Against Invoice
print('\nFinding Matches...')
mcount, pricechanges, updatedformulary, updatedpricetable, softmatch, pricetable_unmatched_meds, fuzzymatches =\
formulary_update_from_pricetable(formulary, pricetable)
print('Number of partial medication matches: {}'.format(softmatch))
screen_output.append(['Number of partial medication matches',softmatch])
print('Number of medication matches: {}'.format(mcount))
screen_output.append(['Number of medication matches',mcount])
print('Number of EHHapp formulary price changes: {}'.format(pricechanges))
screen_output.append(['Number of EHHapp formulary price changes',pricechanges])
print('Number of invoice medications without match: {}'.format(len(pricetable_unmatched_meds)))
screen_output.append(['Number of invoice medications without match',len(pricetable_unmatched_meds)])
if verbose_debug:
print('Number of invoice medications without match')
for med in pricetable_unmatched_meds:
print(med)
for i in range(0,4):
print('updated Formulary markdown: {}'.format(updatedformulary[i]._to_markdown()))
# Test BLACKLISTED attribute
blacklisted = [d for d in updatedformulary if d.BLACKLISTED]
print('Number of blacklisted drugs: {}'.format(len(blacklisted)))
screen_output.append(['Number of blacklisted drugs',len(blacklisted)])
# Save updated pricetable
write_pricetable(updatedpricetable, pricetable_persist_path)
write_pricetable
return pricetable_unmatched_meds, output_filename_list, screen_output, fuzzymatches
def process_formulary(pricetable_persist_path, formulary_md_path, output_filename_list, screen_output, verbose_debug=False):
# Load updated pricetable
pricetable = read_pricetable(pricetable_persist_path)
# Processing formulary
print('\nProcessing Formulary Markdown...')
formularylist = fh.read_md(str(formulary_md_path))
formularyparsed = fh.parse_mddata(formularylist)
print('Number of EHHapp formulary medications: {}'.format(len(formularyparsed)))
screen_output.append(['Number of EHHapp formulary medications',len(formularyparsed)])
if verbose_debug:
print('Extracted Formulary Entries:')
print(formularyparsed[0])
for i in range(0,4):
print('from Formulary: NAME:{} DOSECOST:{}'.format(fh.FormularyRecord(formularyparsed[i]).NAME,
fh.FormularyRecord(formularyparsed[i]).DOSECOST))
formulary = fh.store_formulary(formularyparsed)
# Updating Formulary Against Invoice
print('\nFinding Matches...')
mcount, pricechanges, updatedformulary, updatedpricetable, softmatch, pricetable_unmatched_meds, fuzzymatches =\
formulary_update_from_pricetable(formulary, pricetable)
print('Number of partial medication matches: {}'.format(softmatch))
screen_output.append(['Number of partial medication matches',softmatch])
print('Number of medication matches: {}'.format(mcount))
screen_output.append(['Number of medication matches',mcount])
print('Number of EHHapp formulary price changes: {}'.format(pricechanges))
screen_output.append(['Number of EHHapp formulary price changes',pricechanges])
print('Number of invoice medications without match: {}'.format(len(pricetable_unmatched_meds)))
screen_output.append(['Number of invoice medications without match',len(pricetable_unmatched_meds)])
if verbose_debug:
print('Number of invoice medications without match')
for med in pricetable_unmatched_meds:
print(med)
for i in range(0,4):
print('updated Formulary markdown: {}'.format(updatedformulary[i]._to_markdown()))
# Test BLACKLISTED attribute
blacklisted = [d for d in updatedformulary if d.BLACKLISTED]
print('Number of blacklisted drugs: {}'.format(len(blacklisted)))
screen_output.append(['Number of blacklisted drugs',len(blacklisted)])
# Save updated pricetable
write_pricetable(updatedpricetable, pricetable_persist_path)
write_pricetable
return pricetable_unmatched_meds, output_filename_list, screen_output, fuzzymatches
def process_usermatches(usermatches, formulary_md_path, pricetable_unmatched_meds, pricetable_persist_path,
pricetable_output_path, output_filename_list, screen_output):
# Load updated pricetable
pricetable = read_pricetable(pricetable_persist_path)
# Process FileIO
formulary_md_filename = formulary_md_path.split('/')[-1] # Remove directory from filename
formulary_md_filename_no_extension = formulary_md_filename.split('.', 1)[0]
current_script_path = os.path.realpath(__file__)[:-len('/rxparse.py')]
formulary_update_rm_path = current_script_path+'/output/'+formulary_md_filename_no_extension+'_UPDATED.markdown'
output_filename_list.append(formulary_md_filename_no_extension+'_UPDATED.markdown')
formulary_update_tsv_path = current_script_path+'/output/'+formulary_md_filename_no_extension+'_UPDATED.tsv'
output_filename_list.append(formulary_md_filename_no_extension+'_UPDATED.tsv')
# Processing formulary
print('\nProcessing Formulary Markdown...')
formularylist = fh.read_md(str(formulary_md_path))
formularyparsed = fh.parse_mddata(formularylist)
formulary = fh.store_formulary(formularyparsed)
updatedpricetable, updatedformulary, newmcount, newpricechanges, pricetable_unmatched_meds= formulary_update_from_usermatches(formulary, pricetable, pricetable_unmatched_meds, usermatches)
# Save updated formulary as markdown and tsv
formulary_to_markdown(updatedformulary, formulary_update_rm_path)
formulary_to_tsv(updatedformulary, formulary_update_tsv_path)
print(updatedpricetable)
# Save updated pricetable
write_pricetable(updatedpricetable, pricetable_persist_path)
write_pricetable(updatedpricetable, pricetable_output_path)
# Update screen outputs
screen_output[4][1] = screen_output[4][1] + newmcount # Number of matches
screen_output[5][1] = screen_output[5][1] + newpricechanges # Number of price changes
screen_output[6][1] = screen_output[6][1] - newmcount # Number of unmatched invoice entries
return pricetable_unmatched_meds, screen_output
def process_usermatches(usermatches, formulary_md_path, pricetable_unmatched_meds, pricetable_persist_path,
pricetable_output_path, output_filename_list, screen_output):
# Load updated pricetable
pricetable = read_pricetable(pricetable_persist_path)
# Process FileIO
formulary_md_filename = formulary_md_path.split('/')[-1] # Remove directory from filename
formulary_md_filename_no_extension = formulary_md_filename.split('.', 1)[0]
current_script_path = os.path.realpath(__file__)[:-len('/rxparse.py')]
formulary_update_rm_path = current_script_path+'/output/'+formulary_md_filename_no_extension+'_UPDATED.markdown'
output_filename_list.append(formulary_md_filename_no_extension+'_UPDATED.markdown')
formulary_update_tsv_path = current_script_path+'/output/'+formulary_md_filename_no_extension+'_UPDATED.tsv'
output_filename_list.append(formulary_md_filename_no_extension+'_UPDATED.tsv')
# Processing formulary
print('\nProcessing Formulary Markdown...')
formularylist = fh.read_md(str(formulary_md_path))
formularyparsed = fh.parse_mddata(formularylist)
formulary = fh.store_formulary(formularyparsed)
updatedpricetable, updatedformulary, newmcount, newpricechanges, pricetable_unmatched_meds= formulary_update_from_usermatches(formulary, pricetable, pricetable_unmatched_meds, usermatches)
# Save updated formulary as markdown and tsv
formulary_to_markdown(updatedformulary, formulary_update_rm_path)
formulary_to_tsv(updatedformulary, formulary_update_tsv_path)
print(updatedpricetable)
# Save updated pricetable
write_pricetable(updatedpricetable, pricetable_persist_path)
write_pricetable(updatedpricetable, pricetable_output_path)
# Update screen outputs
screen_output[4][1] = screen_output[4][1] + newmcount # Number of matches
screen_output[5][1] = screen_output[5][1] + newpricechanges # Number of price changes
screen_output[6][1] = screen_output[6][1] - newmcount # Number of unmatched invoice entries
return pricetable_unmatched_meds, screen_output