def _update_group_data_perf_param(self, sim, sim_index=None):
""" Update the dataframe with results of the simulation that ran.
"""
if sim_index is None:
sim_index = self._search_for_sim_index(sim)
# Update all performance parameters in output DF for that column
if sim.output is None or sim.method.collection_criteria is None:
# Simulation failed, don't try to eval the output:
for perf_param_name, perf_param in self.perf_params.items():
self.group_data.loc[sim_index, perf_param_name] = np.nan
else:
eval_context = {"output": sim.output}
for perf_param_name, perf_param in self.perf_params.items():
val = eval(perf_param, eval_context)
self.group_data.loc[sim_index, perf_param_name] = float(val)
# Free up disk space and memory if requested:
if self.auto_delete_run_sims:
attempt_remove_file(sim.cadet_filepath)
self.simulations.remove(sim)
# Manually trigger the event, because the modification happens below
# the Traits layer.
self.group_data_updated_event = True
def test_setuplogging_with_file(self):
log_file = abspath(join(HERE, "temp.log"))
initialize_logging(log_file=log_file)
try:
self.assert_log_file_found(expected_file=log_file)
finally:
attempt_remove_file(log_file)
def test_setuplogging_with_prefix(self):
initialize_logging(prefix="TEMP")
try:
self.assert_log_file_found()
finally:
log_file = get_log_file()
attempt_remove_file(log_file)
def test_save_task_no_ext(self):
filename_no_ext = "testing_tempfile_kromatography3"
task = self.task
with temp_fname(filename_no_ext):
task.save_project_as(filename_no_ext)
self.assertFalse(isfile(filename_no_ext))
correct_file = filename_no_ext + KROM_EXTENSION
self.assertTrue(isfile(correct_file))
attempt_remove_file(correct_file)
def test_get_log_file(self):
root_logger = logging.getLogger()
while root_logger.handlers:
root_logger.handlers.pop(0)
log_file = abspath(join(HERE, "temp.log"))
try:
root_logger.addHandler(logging.FileHandler(log_file))
found_log_file = get_log_file()
self.assertEqual(found_log_file, log_file)
finally:
del root_logger
attempt_remove_file(log_file)
def tearDown(self):
root_logger = logging.getLogger()
del root_logger
attempt_remove_file(self.log_file)