def checkConflicts(self):
if self.params['stackid'] is None:
apDisplay.printError("stack id was not defined")
if self.params['start'] is None:
apDisplay.printError("a number of starting classes was not provided")
if self.params['end'] is None:
apDisplay.printError("a number of ending classes was not provided")
if self.params['runname'] is None:
apDisplay.printError("run name was not defined")
self.stackdata = apStack.getOnlyStackData(self.params['stackid'], msg=False)
stackfile = os.path.join(self.stackdata['path']['path'], self.stackdata['name'])
# check for virtual stack
self.params['virtualdata'] = None
if not os.path.isfile(stackfile):
vstackdata = apStack.getVirtualStackParticlesFromId(self.params['stackid'])
npart = len(vstackdata['particles'])
self.params['virtualdata'] = vstackdata
else:
npart = apFile.numImagesInStack(stackfile)
if self.params['numpart'] is None:
self.params['numpart'] = npart
elif self.params['numpart'] > npart:
apDisplay.printError("trying to use more particles "+str(self.params['numpart'])
+" than available "+str(apFile.numImagesInStack(stackfile)))
self.boxsize = apStack.getStackBoxsize(self.params['stackid'])
self.workingboxsize = math.floor(self.boxsize/self.params['bin'])
if not self.params['mask']:
self.params['mask'] = (self.boxsize/2)-2
self.workingmask = math.floor(self.params['mask']/self.params['bin'])
if self.params['mramethod'] == 'imagic':
self.imagicroot = apIMAGIC.checkImagicExecutablePath()
self.imagicversion = apIMAGIC.getImagicVersion(self.imagicroot)
def checkConflicts(self):
### check for IMAGIC installation
self.imagicroot = apIMAGIC.checkImagicExecutablePath()
self.imagicversion = apIMAGIC.getImagicVersion(self.imagicroot)
### check input parameters
if self.params['alignid'] is None:
apDisplay.printError("There is no stack ID specified")
if self.params['runname'] is None:
apDisplay.printError("enter a run ID")
if self.params['MSAdistance'] is None:
apDisplay.printError("enter distance criteria for MSA program (i.e. eulidean, chisquare, modulation)")
return
def checkConflicts(self):
### check for IMAGIC installation
self.imagicroot = apIMAGIC.checkImagicExecutablePath()
self.imagicversion = apIMAGIC.getImagicVersion(self.imagicroot)
### check input parameters
if self.params['analysisId'] is None:
apDisplay.printError("There is no imagic analysis Id specified")
if self.params['runname'] is None:
apDisplay.printError("enter a run ID")
if self.params['num_classes'] is None:
apDisplay.printError("enter number of classes that you want")
return
def checkConflicts(self):
### check for IMAGIC installation
self.imagicroot = apIMAGIC.checkImagicExecutablePath()
self.imagicversion = apIMAGIC.getImagicVersion(self.imagicroot)
### check input parameters
if self.params['analysisId'] is None:
apDisplay.printError("There is no imagic analysis Id specified")
if self.params['runname'] is None:
apDisplay.printError("enter a run ID")
if self.params['num_classes'] is None:
apDisplay.printError("enter number of classes that you want")
return
