def cleanAllArmiTempDirs(olderThanDays: int):
"""
Delete all ARMI-related files from other unrelated runs after `olderThanDays` days (in
case this failed on earlier runs).
.. warning:: This will break any concurrent runs that are still running.
This is a useful utility in HPC environments when some runs crash sometimes.
"""
# pylint: disable=import-outside-toplevel # avoid cyclic import
from armi.utils.pathTools import cleanPath
gracePeriod = datetime.timedelta(days=olderThanDays)
now = datetime.datetime.now()
thisRunFolder = os.path.basename(_FAST_PATH)
for dirname in os.listdir(APP_DATA):
dirPath = os.path.join(APP_DATA, dirname)
if not os.path.isdir(dirPath):
continue
try:
fromThisRun = dirname == thisRunFolder # second chance to delete
_rank, dateString = dirname.split("-")
dateOfFolder = datetime.datetime.strptime(dateString,
"%Y%m%d%H%M%S%f")
runIsOldAndLikleyComplete = (now - dateOfFolder) > gracePeriod
if runIsOldAndLikleyComplete or fromThisRun:
# Delete old files
cleanPath(dirPath)
except: # pylint: disable=bare-except
pass
def deleteCache(cachedFolder):
"""
Remove this folder.
Requires safeword because this is potentially extremely destructive.
"""
if "Output_Cache" not in cachedFolder:
raise RuntimeError(
"Cache location must contain safeword: `Output_Cache`.")
cleanPath(cachedFolder)
def __exit__(self, exc_type, exc_value, traceback):
DirectoryChanger.__exit__(self, exc_type, exc_value, traceback)
try:
pathTools.cleanPath(self.destination, context.MPI_RANK)
except PermissionError:
if os.name == "nt":
runLog.warning(
"There is an issue where Windows will not agree to delete private directories."
"That is, if you create a directory with a name starting with a period, the "
"TempDirChanger will not be able to clean it (for instance, a '.git' dir)."
)
context.waitAll()
def cleanTempDirs(olderThanDays=None):
"""
Clean up temporary files after a run.
The Windows HPC system sends a SIGBREAK signal when the user cancels a job, which
is NOT handled by ``atexit``. Notably SIGBREAK doesn't exist off Windows.
For the SIGBREAK signal to work with a Microsoft HPC, the ``TaskCancelGracePeriod``
option must be configured to be non-zero. This sets the period between SIGBREAK
and SIGTERM/SIGINT. To do cleanups in this case, we must use the ``signal`` module.
Actually, even then it does not work because MS ``mpiexec`` does not pass signals
through.
Parameters
----------
olderThanDays: int, optional
If provided, deletes other ARMI directories if they are older than the requested
time.
"""
# pylint: disable=import-outside-toplevel # avoid cyclic import
from armi import runLog
from armi.utils.pathTools import cleanPath
disconnectAllHdfDBs()
printMsg = runLog.getVerbosity() <= DEBUG
if _FAST_PATH_IS_TEMPORARY and os.path.exists(_FAST_PATH):
if printMsg:
print(
"Cleaning up temporary files in: {}".format(_FAST_PATH),
file=sys.stdout,
)
try:
cleanPath(_FAST_PATH)
except Exception as error: # pylint: disable=broad-except
for outputStream in (sys.stderr, sys.stdout):
if printMsg:
print(
"Failed to delete temporary files in: {}\n"
" error: {}".format(_FAST_PATH, error),
file=outputStream,
)
if olderThanDays is not None:
cleanAllArmiTempDirs(olderThanDays)
def test_cleanPathMpi(self):
# """Simple tests of cleanPath(), in the MPI scenario"""
with TemporaryDirectoryChanger():
# TEST 0: File is not safe to delete, due to name pathing
filePath0 = "test0_cleanPathNoMpi"
open(filePath0, "w").write("something")
self.assertTrue(os.path.exists(filePath0))
with self.assertRaises(Exception):
pathTools.cleanPath(filePath0, mpiRank=context.MPI_RANK)
context.waitAll()
# TEST 1: Delete a single file
filePath1 = "test1_cleanPathNoMpi_mongoose"
open(filePath1, "w").write("something")
self.assertTrue(os.path.exists(filePath1))
pathTools.cleanPath(filePath1, mpiRank=context.MPI_RANK)
context.waitAll()
self.assertFalse(os.path.exists(filePath1))
# TEST 2: Delete an empty directory
dir2 = "mongoose"
os.mkdir(dir2)
self.assertTrue(os.path.exists(dir2))
pathTools.cleanPath(dir2, mpiRank=context.MPI_RANK)
context.waitAll()
self.assertFalse(os.path.exists(dir2))
# TEST 3: Delete a directory with two files inside
# create directory
dir3 = "mongoose"
os.mkdir(dir3)
# throw in a couple of simple text files
open(os.path.join(dir3, "file1.txt"), "w").write("something1")
open(os.path.join(dir3, "file2.txt"), "w").write("something2")
# delete the directory and test
self.assertTrue(os.path.exists(dir3))
self.assertTrue(os.path.exists(os.path.join(dir3, "file1.txt")))
self.assertTrue(os.path.exists(os.path.join(dir3, "file2.txt")))
pathTools.cleanPath(dir3, mpiRank=context.MPI_RANK)
context.waitAll()
self.assertFalse(os.path.exists(dir3))
def snapshotRequest(self, cycle, node):
"""
Process a snapshot request at this time.
This copies various physics input and output files to a special folder that
follow-on analysis be executed upon later.
Notes
-----
This was originally used to produce MC2/DIF3D inputs for external
parties (who didn't have ARMI) to review. Since then, the concept
of snapshots has evolved with respect to the
:py:class:`~armi.operators.snapshots.OperatorSnapshots`.
"""
runLog.info("Producing snapshot for cycle {0} node {1}".format(
cycle, node))
self.r.core.zones.summary()
newFolder = "snapShot{0}_{1}".format(cycle, node)
if os.path.exists(newFolder):
runLog.important(
"Deleting existing snapshot data in {0}".format(newFolder))
pathTools.cleanPath(newFolder) # careful with cleanPath!
# give it a minute.
time.sleep(1)
if os.path.exists(newFolder):
runLog.warning(
"Deleting existing snapshot data in {0} failed".format(
newFolder))
else:
os.mkdir(newFolder)
# copy the cross section inputs
for fileName in os.listdir("."):
if "mcc" in fileName and re.search(r"[A-Z]AF?\d?.inp", fileName):
base, ext = os.path.splitext(fileName)
# add the cycle and timenode to the XS input file names so that a rx-coeff case that runs
# in here won't overwrite them.
shutil.copy(
fileName,
os.path.join(
newFolder,
"{0}_{1:03d}_{2:d}{3}".format(base, cycle, node, ext)),
)
isoFName = "ISOTXS-c{0}".format(cycle)
pathTools.copyOrWarn("ISOTXS for snapshot", isoFName,
pathTools.armiAbsPath(newFolder, "ISOTXS"))
pathTools.copyOrWarn(
"DIF3D output for snapshot",
self.cs.caseTitle + "{0:03d}.out".format(cycle),
newFolder,
)
pathTools.copyOrWarn("Shuffle logic for snapshot",
self.cs["shuffleLogic"], newFolder)
pathTools.copyOrWarn("Geometry file for snapshot", self.cs["geomFile"],
newFolder)
pathTools.copyOrWarn("Loading definition for snapshot",
self.cs["loadingFile"], newFolder)
pathTools.copyOrWarn(
"Flow history for snapshot",
self.cs.caseTitle + ".flow_history.txt",
newFolder,
)
pathTools.copyOrWarn(
"Pressure history for snapshot",
self.cs.caseTitle + ".pressure_history.txt",
newFolder,
)
def __exit__(self, exc_type, exc_value, traceback):
DirectoryChanger.__exit__(self, exc_type, exc_value, traceback)
pathTools.cleanPath(self.destination)
