Python AutecologyXML._scan_knowledgerules 예제들

예제 #1

import sys
from matplotlib import pyplot as plt

sys.path.append("../")
from autecology_xml import AutecologyXML

#xmltest = AutecologyXML(filename = "../../../_knowledgerules/parameters/water_quality/Light_extinction.xml")
xmltest = AutecologyXML(
    filename="../../../_knowledgerules/parameters/hydrodynamics/Fetch.xml")
#xmltest = AutecologyXML(filename = "../../../_knowledgerules/parameters/hydrodynamics/Watersurface.xml")
xmltest._readxml()
print(type(xmltest.xmlroot))
xmltest._scan()
print(xmltest.topic_name)
print(xmltest.commonnames)

xmltest._scan_modeltype("HSI")
print(xmltest.modeltypename)
print(xmltest.systems)

xmltest._scan_knowledgerules(modeltypename="HSI",
                             systemname="ijsselmeergebied")
print(xmltest.XMLconvention["allowed_knowledgeRulesCategories"])
print(xmltest.knowledgeRulesNames)
print(all(elem in xmltest.XMLconvention["allowed_knowledgeRulesCategories"] for elem \
         in xmltest.knowledgeRulesCategories))

예제 #2

sys.path.append("../")
from autecology_xml import AutecologyXML

#xmltest = AutecologyXML(filename = "../../../_knowledgerules/species/Birds/Phalacrocorax carbo.xml")
#xmltest = AutecologyXML(filename = "../../../_knowledgerules/species/Molluscs/Dreissena_polymorpha.xml")
#xmltest = AutecologyXML(filename = "../../../_knowledgerules/species/Macrophytes/Nitellopsis obtusa.xml")
xmltest = AutecologyXML(
    filename=
    "../../../_knowledgerules/species/Macrophytes/Myriophyllum_spicatum.xml")
xmltest._readxml()
print(type(xmltest.xmlroot))

xmltest._scan()
print(xmltest.topic_name)
print(xmltest.EoL_ID)
print(xmltest.EoL_Link)
print(xmltest.latinname)
print(xmltest.commonnames)

xmltest._scan_modeltype("HSI")
print(xmltest.modeltypename)
print(xmltest.systems)

xmltest._scan_knowledgerules(modeltypename=xmltest.modeltypename,
                             systemname=xmltest.systems[0])
print(xmltest.XMLconvention["allowed_knowledgeRulesCategories"])
print(xmltest.knowledgeRulesNames)
print(all(elem in xmltest.XMLconvention["allowed_knowledgeRulesCategories"] for elem \
         in xmltest.knowledgeRulesCategories))

print("Done.")

예제 #3

import sys

sys.path.append("../")
from autecology_xml import AutecologyXML

xmltest = AutecologyXML(
    filename="../../../_knowledgerules/species/Macrophytes/Chara_spp.xml")
xmltest._readxml()
print(type(xmltest.xmlroot))
xmltest._scan()
testext = xmltest._read_topicdescription()
print(type(testext))
xmltest._scan_modeltype("HSI")
xmltest._scan_knowledgerules(modeltypename="HSI", systemname="Markermeer")
print(all(elem in xmltest.XMLconvention["allowed_knowledgeRulesCategories"] for elem \
         in xmltest.knowledgeRulesCategories))

print(xmltest.knowledgeRulesNames)
print(xmltest.knowledgeRulesCategories)
print(xmltest.XMLconvention["allowed_knowledgeRulesCategories"])
fb_tag = xmltest.get_element_formula_based(modeltypename="HSI",
                                           systemname="Markermeer",
                                           fbname="P_Chara_visibility")
fb_data = xmltest.get_data_formula_based_data(fb_tag)

print(fb_data)
print(fb_data['parameters'])
print(fb_data['parameters'][0]['data'])
print(type(fb_data))

fb_settings = {

예제 #4

파일: validate_xmls.py 프로젝트: Deltares/KnowledgeRules

					validation_log.append(["Missing language in CommonNames :", str(miss_species_description) +". File : " + path_xml_file])
				else:
					validation_log.append(["Someting wrong between languages SpeciesDescription and CommonNames, please investigate : " + path_xml_file])
			
			for cur_modeltype in xmltest.modeltypes:
				#check scan of XML modeltypes
				try:
					xmltest._scan_modeltype(cur_modeltype)
				except:
					validation_log.append(["XML ModelType could not be scanned with AutecologyXML. File : " + path_xml_file +\
										   " with ModelType " + str(cur_modeltype)]) 
					continue

				for cur_system in xmltest.systems:
					try:
						xmltest._scan_knowledgerules(cur_modeltype, cur_system)
					except:
						validation_log.append(["XML Knowledgerules could not be scanned with AutecologyXML. File : " + path_xml_file +\
										   " with ModelType " + str(cur_modeltype) + " and System " + str(cur_system)]) 
						continue

					#check if languages are correct
					cur_system_description = xmltest._read_systemdescription(cur_modeltype, cur_system)
					cur_system_description_LANG = sorted([line["language"] for line in cur_system_description])

					if(cur_species_commonname_LANG != cur_system_description_LANG):
						miss_common_name = (set(cur_system_description_LANG).difference(cur_species_commonname_LANG))
						miss_system_description =  (set(cur_species_commonname_LANG).difference(cur_system_description_LANG))
						if(len(miss_common_name) != 0):
							validation_log.append(["Missing language in SystemDescription :" +  str(miss_common_name) +". File : " + path_xml_file +\
												  " with ModelType " + str(cur_modeltype) + " and System " + str(cur_system)])

예제 #5

파일: example_read_ResponseCurve.py 프로젝트: Deltares/KnowledgeRules

sys.path.append("../")
from autecology_xml import AutecologyXML

#xmltest = AutecologyXML(filename = "../../../_knowledgerules/species/Birds/Phalacrocorax carbo.xml")
#xmltest = AutecologyXML(filename = "../../../_knowledgerules/species/Molluscs/Dreissena_polymorpha.xml")
xmltest = AutecologyXML(
    filename="../../../_knowledgerules/species/Birds/Gallinago_gallinago.xml")

xmltest._readxml()
print(type(xmltest.xmlroot))
xmltest._scan()
testext = xmltest._read_topicdescription()
print(type(testext))
xmltest._scan_modeltype("HSI")
#xmltest._scan_knowledgerules(systemname = "adult")
xmltest._scan_knowledgerules(modeltypename="HSI", systemname="adult")
print(all(elem in xmltest.XMLconvention["allowed_knowledgeRulesCategories"] for elem \
         in xmltest.knowledgeRulesCategories))
print(xmltest.knowledgeRulesNames)
print(xmltest.knowledgeRulesCategories)
#rc_tag = xmltest.get_element_response_curve(modeltypename = "HSI", systemname = "adult", rcname = "afstand_tot_moeras")
#rc_tag = xmltest.get_element_response_curve(modeltypename = "HSI", systemname = "adult", rcname = "substrate_type")
rc_tag = xmltest.get_element_response_curve(modeltypename="HSI",
                                            systemname="adult",
                                            rcname="water_storage_capacity")
print(rc_tag)
rc_data = xmltest.get_data_response_curve_data(rc_tag)
print(rc_data)
print(type(rc_data))
print(type(rc_data["rule"]))

예제 #6

import pandas

sys.path.append("../")
from autecology_xml import AutecologyXML

xmltest = AutecologyXML(
    filename=
    "../../../_knowledgerules/Habitats/Vegetation_associations/Vegetationtypes_Northen_Delta.xml"
)
xmltest._readxml()
print(type(xmltest.xmlroot))
xmltest._scan()
testext = xmltest._read_topicdescription()
print(type(testext))
xmltest._scan_modeltype("HSI")
xmltest._scan_knowledgerules(modeltypename="HSI", systemname="biesbosch_area")
print(all(elem in xmltest.XMLconvention["allowed_knowledgeRulesCategories"] for elem \
         in xmltest.knowledgeRulesCategories))
print(xmltest.systemname)
print(xmltest.knowledgeRulesNr)
print(xmltest.knowledgeRulesCategorie)
print(xmltest.knowledgeRulesNames)
print(xmltest.XMLconvention["allowed_knowledgeRulesNames"])

#TO DO: CREATE TABLE OUT OF MultipleReclassification
mr_element = xmltest.get_element_multiple_reclassification(
    modeltypename="HSI",
    systemname="biesbosch_area",
    mrname="vegetationtypes_without_grazing")
mr_data = xmltest.get_data_multiple_reclassification_data(mr_element)