def dummy_type():
return ContainerType(
name="dummy",
well_count=15,
well_depth_mm=None,
well_volume_ul=Unit(200, "microliter"),
well_coating=None,
sterile=False,
is_tube=False,
cover_types=[],
seal_types=None,
capabilities=[],
shortname="dummy",
col_count=5,
dead_volume_ul=Unit(15, "microliter"),
safe_min_volume_ul=Unit(30, "microliter")
)
def dummy_echo():
return Container(
None,
ContainerType(
name="dummy",
well_count=384,
well_depth_mm=None,
well_volume_ul=Unit(65, "microliter"),
well_coating=None,
sterile=False,
is_tube=False,
cover_types=[],
seal_types=None,
capabilities=[],
shortname="dummy",
col_count=96,
dead_volume_ul=Unit(15, "microliter"),
safe_min_volume_ul=Unit(15, "microliter"),
true_max_vol_ul=Unit(135, "microliter"),
vendor="Labcyte"
)
)
def define_container_types():
#
# Define assay plate container
#
container_types = dict()
# Define the container type for 4titude 4ti-0223.
# info: http://4ti.co.uk/microplates/black-clear-bottom/96-well/
# drawing: http://4ti.co.uk/files/1614/0542/7662/4ti-0223_Marketing_Drawing.pdf
# All arguments to ContainerType are required!
capabilities = [
'pipette', 'spin', 'absorbance', 'fluorescence', 'luminescence',
'incubate', 'gel_separate', 'cover', 'seal', 'stamp', 'dispense'
]
container_type = ContainerType(name='4titude 4ti-0223',
is_tube=False,
well_count=96,
well_depth_mm=Unit(11.15, 'millimeter'),
well_volume_ul=Unit(300, 'microliter'),
well_coating='polystyrene',
sterile=False,
cover_types=[],
seal_types=[],
capabilities=capabilities,
shortname='4ti-0223',
col_count=12,
dead_volume_ul=Unit(20, 'microliter'),
safe_min_volume_ul=Unit(50, 'microliter'))
# Attach well area.
well_diameter = Unit(6.30, "millimeters")
well_area = np.pi * (well_diameter / 2)**2
setattr(container_type, 'well_area', well_area)
container_types[container_type.name] = container_type
return container_types
import unittest
from autoprotocol.container_type import ContainerType
from autoprotocol.container import Container, Well
dummy_type = ContainerType(name="dummy",
well_count=15,
well_depth_mm=None,
well_volume_ul=200,
well_coating=None,
sterile=False,
is_tube=False,
capabilities=[],
shortname="dummy",
col_count=5,
dead_volume_ul=15)
class ContainerWellRefTestCase(unittest.TestCase):
def setUp(self):
self.c = Container(None, dummy_type)
def test_well_ref(self):
self.assertIsInstance(self.c.well("B4"), Well)
self.assertIsInstance(self.c.well(14), Well)
def test_decompose(self):
self.assertEqual((2, 3), self.c.decompose("C4"))
def test_well_identity(self):
self.assertIs(self.c.well("A1"), self.c.well(0))
# Define the container type for 4titude 4ti-0223.
# info: http://4ti.co.uk/microplates/black-clear-bottom/96-well/
# drawing: http://4ti.co.uk/files/1614/0542/7662/4ti-0223_Marketing_Drawing.pdf
# All arguments to ContainerType are required!
capabilities = [
'pipette', 'spin', 'absorbance', 'fluorescence', 'luminescence',
'incubate', 'gel_separate', 'cover', 'seal', 'stamp', 'dispense'
]
well_diameter = Unit(6.30, "millimeters")
well_area = np.pi * (well_diameter / 2)**2
container_type = ContainerType(name='4titude 4ti-0223',
is_tube=False,
well_count=96,
well_depth_mm=Unit(11.15, 'millimeter'),
well_volume_ul=Unit(300, 'milliliter'),
well_coating='polystyrene',
sterile=False,
capabilities=capabilities,
shortname='4ti-0223',
col_count=12,
dead_volume_ul=Unit(20, 'milliliter'),
safe_min_volume_ul=Unit(50, 'milliliter'))
# Generate a unique container ID
import uuid
id = str(uuid.uuid4())
# Define the container
container = Container(name="assay-plate", id=id, container_type=container_type)
#
# Assay Parameters
CONFIG_INITIALIZED = True
# Correction to Transcriptic-specific dead volumes
_CONTAINER_TYPES['96-deep-kf'] = _CONTAINER_TYPES['96-deep-kf']._replace(
cover_types=["standard"])
_CONTAINER_TYPES['6-flat-tc'] = ContainerType(
name="6-well tissue cell culture plate",
well_count=6,
well_depth_mm=None,
well_volume_ul=Unit(5000.0, "microliter"),
well_coating=None,
sterile=False,
cover_types=["standard", "universal"],
seal_types=None,
capabilities=["cover", "incubate", "image_plate"],
shortname="6-flat-tc",
is_tube=False,
col_count=3,
dead_volume_ul=Unit(400, "microliter"),
safe_min_volume_ul=Unit(600, "microliter"))
_CONTAINER_TYPES['96-flat-tc'] = ContainerType(
name="96-well tissue cell culture flat-bottom plate",
well_count=96,
well_depth_mm=None,
well_volume_ul=Unit(340.0, "microliter"),
well_coating=None,
sterile=False,
