def __init__(self, sequence="", sequenceFile=""):
# provide the flexibility to submit either a sequence
# file or an actual sequence as a string
if sequence == "" and sequenceFile == "":
raise SequenceException("Empty sequence/sequence file")
# if the sequence isn't empty constuct a local
# sequence object using the sequence
if not sequence == "":
# note we set the validate flag to check the sequence is valid and deal
# with whitespace
self.SeqObj = Sequence(sequence, validateSeq=True)
else:
parserMachine = SequenceFileParser()
self.SeqObj = Sequence(parserMachine.parseSeqFile(sequenceFile))
def __init__(self, sequence="", sequenceFile=""):
"""
sequencePermutant objects, like sequenceParameter objects, can be initialized by either an amino acid sequence as a string, or a sequence file. Such sequence files can be FASTA files, or simply an amino acid sequence in a text file.
"""
warn_notReadyYet()
# provide the flexibility to submit either a sequence
# file or an actual sequence as a string
if sequence == "" and sequenceFile == "":
return None
# if the sequence isn't empty constuct a local
# sequence object using the sequence
if not sequence == "":
self.SeqObj = Sequence(sequence)
else:
parserMachine = SequenceFileParser()
self.SeqObj = Sequence(parserMachine.parseSeqFile(sequenceFile))
self.WL_ready = False
def __init__(self, sequence="", sequenceFile=""):
"""
sequencePermutant objects, like sequenceParameter objects, can be initialized by either an amino acid
sequence as a string, or a sequence file. Such sequence files can be FASTA files, or simply an amino
acid sequence in a text file.
"""
warn_notReadyYet()
# provide the flexibility to submit either a sequence
# file or an actual sequence as a string
if sequence == "" and sequenceFile == "":
return None
# if the sequence isn't empty constuct a local
# sequence object using the sequence
if not sequence == "":
self.SeqObj = Sequence(sequence)
else:
parserMachine = SequenceFileParser()
self.SeqObj = Sequence(parserMachine.parseSeqFile(sequenceFile))
self.WL_ready = False
