def test_mismatch_oneth(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
f = _create_parent_child(f, (11, 17), (13, 17))
f.close()
validation = bald.validate_hdf5(tfile)
self.assertFalse(validation.is_valid())
def test_match(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
f = _create_parent_child(f, (11, 17), (11, 17))
f.close()
validation = bald.validate_hdf5(tfile, cache=self.acache)
exns = validation.exceptions()
self.assertTrue(validation.is_valid(), msg='{} != []'.format(exns))
def test_match_clead_dim(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
# child has leading dimension wrt parent
f = _create_parent_child(f, (13, 17), (7, 13, 17))
f.close()
validation = bald.validate_hdf5(tfile)
self.assertTrue(validation.is_valid())
def test_invalid_uri(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
f = _create_parent_child(f, (11, 17), (11, 17))
f.attrs['bald__turtle'] = 'bald__walnut'
f.close()
validation = bald.validate_hdf5(tfile)
self.assertFalse(validation.is_valid())
def test_mismatch_pdisjc_trail_dim(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
# child and parent have disjoint trailing dimensions
f = _create_parent_child(f, (13, 17, 2), (13, 17, 9))
f.close()
validation = bald.validate_hdf5(tfile)
self.assertFalse(validation.is_valid())
def test_match(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
f = _create_parent_child(f, (11, 17), (11, 17))
f.close()
validation = bald.validate_hdf5(tfile)
exns = validation.exceptions()
self.assertTrue(validation.is_valid(),
msg='{} != []'.format(exns))
def test_match_clead_dim(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
# child has leading dimension wrt parent
f = _create_parent_child(f, (13, 17), (7, 13, 17))
f.close()
validation = bald.validate_hdf5(tfile, cache=self.acache)
exs = validation.exceptions()
self.assertTrue(validation.is_valid(), msg='{} != []'.format(exs))
def test_valid_uri(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
group_alias = f.create_group('bald__alias_list')
f.attrs['bald__isAliasedBy'] = group_alias.ref
group_alias.attrs['skosPrefLabel'] = 'http://www.w3.org/2004/02/skos/core#prefLabel'
dsetp = f.create_dataset("parent_dataset", (11, 17), dtype='i')
dsetp.attrs['skosPrefLabel'] = 'alabel'
f.close()
validation = bald.validate_hdf5(tfile, cache=self.acache)
exns = validation.exceptions()
self.assertTrue(validation.is_valid(), msg='{} != []'.format(exns))
def test_valid_uri(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
group_alias = f.create_group('bald__alias_list')
f.attrs['bald__isAliasedBy'] = group_alias.ref
group_alias.attrs['skosPrefLabel'] = 'http://www.w3.org/2004/02/skos/core#prefLabel'
dsetp = f.create_dataset("parent_dataset", (11, 17), dtype='i')
dsetp.attrs['skosPrefLabel'] = 'alabel'
f.close()
validation = bald.validate_hdf5(tfile)
exns = validation.exceptions()
self.assertTrue(validation.is_valid(), msg='{} != []'.format(exns))
def test_mismatch_oneth(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
f = _create_parent_child(f, (11, 17), (13, 17))
f.close()
validation = bald.validate_hdf5(tfile)
exns = validation.exceptions()
expected = [
'p declares a child of c but the arrays do not conform to the bald array reference rules'
]
self.assertTrue((not validation.is_valid()) and exns == expected,
msg='{} != {}'.format(exns, expected))
def test_invalid_uri(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
f.attrs['bald__turtle'] = 'bald__walnut'
group_alias = f.create_group('bald__alias_list')
f.attrs['bald__isAliasedBy'] = group_alias.ref
group_alias.attrs[
'skosPrefLabel'] = 'http://www.w3.org/2004/02/skos/core#notThisPrefLabel'
dsetp = f.create_dataset("parent_dataset", (11, 17), dtype='i')
dsetp.attrs['skosPrefLabel'] = 'alabel'
f.close()
validation = bald.validate_hdf5(tfile)
self.assertFalse(validation.is_valid())
def test_mismatch_pdisjc_trail_dim(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
# child and parent have disjoint trailing dimensions
f = _create_parent_child(f, (13, 17, 2), (13, 17, 9))
f.close()
validation = bald.validate_hdf5(tfile)
exns = validation.exceptions()
expected = [
'parent_dataset declares a child of child_dataset but the arrays do not conform to the bald array reference rules'
]
self.assertTrue((not validation.is_valid()) and exns == expected,
msg='{} != {}'.format(exns, expected))
def test_invalid_uri(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
f = _create_parent_child(f, (11, 17), (11, 17))
f.attrs['bald__turtle'] = 'bald__walnut'
f.close()
validation = bald.validate_hdf5(tfile, cache=self.acache,
uris_resolve=True)
exns = validation.exceptions()
expected = ['http://binary-array-ld.net/latest/turtle is not resolving as a resource (404).',
'http://binary-array-ld.net/latest/walnut is not resolving as a resource (404).']
self.assertTrue((not validation.is_valid()) and exns == expected,
msg='{} != {}'.format(exns, expected))
def test_invalid_uri(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
f = _create_parent_child(f, (11, 17), (11, 17))
f.attrs['bald__turtle'] = 'bald__walnut'
f.close()
validation = bald.validate_hdf5(tfile)
exns = validation.exceptions()
expected = [
'http://binary-array-ld.net/latest/turtle is not resolving as a resource (404).',
'http://binary-array-ld.net/latest/walnut is not resolving as a resource (404).'
]
self.assertTrue((not validation.is_valid()) and exns == expected,
msg='{} != {}'.format(exns, expected))
def test_invalid_uri(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
f.attrs['bald__turtle'] = 'bald__walnut'
group_alias = f.create_group('bald__alias_list')
f.attrs['bald__isAliasedBy'] = group_alias.ref
group_alias.attrs['skosPrefLabel'] = 'http://www.w3.org/2004/02/skos/core#notThisPrefLabel'
dsetp = f.create_dataset("parent_dataset", (11, 17), dtype='i')
dsetp.attrs['skosPrefLabel'] = 'alabel'
f.close()
validation = bald.validate_hdf5(tfile)
exns = validation.exceptions()
expected = ['http://binary-array-ld.net/latest/turtle is not resolving as a resource (404).',
'http://binary-array-ld.net/latest/walnut is not resolving as a resource (404).']
self.assertTrue((not validation.is_valid()) and exns == expected,
msg='{} != {}'.format(exns, expected))
def test_invalid_uri(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
f.attrs['bald__turtle'] = 'bald__walnut'
group_alias = f.create_group('bald__alias_list')
f.attrs['bald__isAliasedBy'] = group_alias.ref
group_alias.attrs['skosPrefLabel'] = 'http://www.w3.org/2004/02/skos/core#notThisPrefLabel'
dsetp = f.create_dataset("parent_dataset", (11, 17), dtype='i')
dsetp.attrs['skosPrefLabel'] = 'alabel'
f.close()
validation = bald.validate_hdf5(tfile, cache=self.acache)
exns = validation.exceptions()
expected = ['http://binary-array-ld.net/latest/turtle is not resolving as a resource (404).',
'http://binary-array-ld.net/latest/walnut is not resolving as a resource (404).']
self.assertTrue((not validation.is_valid()) and exns == expected,
msg='{} != {}'.format(exns, expected))
def test_mismatch_oneth(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
f = _create_parent_child(f, (11, 17), (13, 17))
f.close()
fname = ('file:///tests/integration/test_validation/Test/'
'test_mismatch_oneth.hdf')
validation = bald.validate_hdf5(tfile, baseuri=fname, cache=self.acache)
exns = validation.exceptions()
expected = ['file:///tests/integration/test_validation/Test/'
'test_mismatch_oneth.hdf/parent_dataset declares a '
'child of file:///tests/integration/test_validation/'
'Test/test_mismatch_oneth.hdf/child_dataset but the'
' arrays do not conform to the bald array reference '
'rules']
self.assertTrue((not validation.is_valid()) and exns == expected,
msg='{} != {}'.format(exns, expected))
def test_mismatch_pdisjc_trail_dim(self):
with self.temp_filename('.hdf') as tfile:
f = h5py.File(tfile, "w")
f = _fattrs(f)
# child and parent have disjoint trailing dimensions
f = _create_parent_child(f, (13, 17, 2), (13, 17, 9))
f.close()
fname = ('file:///tests/integration/test_validation/Test/'
'test_mismatch_pdisjc_trail_dim.hdf')
validation = bald.validate_hdf5(tfile, baseuri=fname, cache=self.acache)
exns = validation.exceptions()
expected = ['file:///tests/integration/test_validation/Test/'
'test_mismatch_pdisjc_trail_dim.hdf/parent_dataset'
' declares a child of file:///tests/integration/'
'test_validation/Test/test_mismatch_pdisjc_trail_dim'
'.hdf/child_dataset but the arrays do not conform to '
'the bald array reference rules']
self.assertTrue((not validation.is_valid()) and exns == expected,
msg='{} != {}'.format(exns, expected))
