def getBarcodeStats(self):
"""
Simple project / subject / barcode stats
"""
self.getGUIFieldValue()
if self.stats_type == 'Project':
proj_stats = self.redcapExec.getProjectStats()
curTime = datetime.now()
cur_date = curTime.strftime('%Y-%m-%d %H:%M')
self.plain_console.appendPlainText("\n\n%s\nProject Stats:\n%s" %
(str(cur_date), proj_stats))
elif self.stats_type == 'Subject':
if self.subjectId == '' or self.subjectId == None:
QMessageBox.about(
self, "WARNING",
"Subject id is empty. Get stats for subject %s failed." %
str(self.subjectId))
return
self.getSubjectType() # --> force to select correct subject type
if self.studyType == '' or self.studyType == None:
QMessageBox.about(
self, "WARNING",
"Study type is empty. Get stats for subject %s failed." %
str(self.subjectId))
return
# a hacking here because we don't care if the subject contains extra frozen id or not.
barcodeExec = BarcodeGenerator(self.subjectId, self.studyType)
barcodeExec.execute()
tmp_barcode_list = barcodeExec.get_barcode_list(self.custom_option)
subj_stats = self.redcapExec.getSubjectStats(tmp_barcode_list)
curTime = datetime.now()
cur_date = curTime.strftime('%Y-%m-%d %H:%M')
self.plain_console.appendPlainText(
"\n\n%s\nSubject %s Stats:\n%s" %
(str(cur_date), self.subjectId, subj_stats))
elif self.stats_type == 'Barcode':
if self.barcode_id is '' or self.barcode_id is None:
QMessageBox.about(
self, "WARNING",
"Barcode id is empty. Set scan status failed. \n\n Please fill up barcode id box"
)
return
barcode_stats = self.redcapExec.getBarcodeStats(self.barcode_id)
curTime = datetime.now()
cur_date = curTime.strftime('%Y-%m-%d %H:%M')
self.plain_console.appendPlainText(
"\n\n%s\nBarcode %s Stats is stored in :\n%s" %
(str(cur_date), self.barcode_id, barcode_stats))
self.plain_console.repaint()
self.plain_console.moveCursor(QTextCursor.End)
def genPrintNewPack(self):
"""
Generate and print new full pack of barcodes
"""
self.getGUIFieldValue()
if self.subjectId == '' or self.subjectId == None:
QMessageBox.about(
self, "WARNING",
"Subject id is empty. Generate / Print new pack for subject %s failed."
% str(self.subjectId))
return
if len(self.subjectId) != 3:
QMessageBox.about(
self, "WARNING",
"Subject id should be three digit. Please double-check")
return
if self.studyType == '' or self.studyType == None:
QMessageBox.about(
self, "WARNING",
"Study type is empty. Generate / Print new pack for subject %s failed."
% str(self.subjectId))
return
if self.processed_by == '' or self.processed_by == None:
QMessageBox.about(self, "WARNING", "Please select current user.")
return
if self.custom_option == '' or self.custom_option == None:
QMessageBox.about(self, "WARNING",
"Please select custom option for printing.")
return
###add constraint to restrict one patient can only be one type
curSubj = self.redcapExec.getInputPatient()
df = pd.DataFrame.from_dict(curSubj)
record = df.loc[df['record_id_dem_endo'] == str(int(self.subjectId))]
if len(record) is 0 or None:
QMessageBox.about(
self, "WARNING",
"--- Please create subject %s form first.\nPlease double check the Id in Redcap entry.\nThe Id should be in numeric format (i.e., 17, 20, 99), \nnot in 3-digit format (i.e., 017, 020, 099)"
% str(self.subjectId))
return
studyType_redcap = record.get('redcap_event_name').values
if len(studyType_redcap) > 1:
QMessageBox.about(
self, "WARNING",
"--- Please check subject %s Redcap data entry.\nOnly one category per patient is allowed.\nIf there is only one catogory has been selected"
% str(self.subjectId))
return
#"CD_ENDO", "CTL_ENDO", "CD_Surgery","CTL_Surgery"
if studyType_redcap == 'cd_arm_1':
studyType_checker = 'CD_ENDO'
elif studyType_redcap == 'control_arm_1':
studyType_checker = 'CTL_ENDO'
elif studyType_redcap == 'cd_arm_2':
studyType_checker = 'CD_Surgery'
elif studyType_redcap == 'control_arm_2':
studyType_checker = 'CTL_Surgery'
if studyType_checker != self.studyType:
print(studyType_redcap)
QMessageBox.about(
self, "WARNING",
"Study type for subject %s does not match. Should it be %s?" %
(str(self.subjectId), str(studyType_checker)))
return
# all set, ready to generate barcode pack
barcodeExec = BarcodeGenerator(self.subjectId, self.studyType)
barcodeExec.execute()
#can optimize - done?
nextAvailActionId = self.redcapExec.getNextAvailActionId()
# new feature 12/19/2019
tmp_barcode_list = barcodeExec.get_barcode_list(
self.custom_option) # More constraint before Christmas...
#set generate action
for tmp_barcode_id in tmp_barcode_list:
if tmp_barcode_id == '': # no need to print
continue
ean8_code = barcodeExec.recordId_to_ean8(tmp_barcode_id)
# generate ean8 code to make sure it matches our criteria
if ean8_code is None:
QMessageBox.about(
self, "WARNING",
"Something wrong with barcode id %s?" % (tmp_barcode_id))
return
self.printLabel(tmp_barcode_id, ean8_code)
# add barcode ean8 code
self.redcapExec.setPrintedAction(nextAvailActionId, tmp_barcode_id,
self.studyType, self.processed_by,
self.action_comment, ean8_code,
self.custom_option)
nextAvailActionId += 1
bool_update_redcap_sophie = self.redcapExec.update_REDCAP_SOPHIE(
self.studyType, str(int(self.subjectId)), tmp_barcode_list,
self.custom_option)
self.plain_comment.clear()
curTime = datetime.now()
cur_date = curTime.strftime('%Y-%m-%d %H:%M')
self.plain_console.appendPlainText(
"\n\n%s\nGenerate new pack for subject %s DONE!\nCustom option:%s\n Printing may takes time, please be patient.\nTotal barcodes to print: %s"
% (str(cur_date), str(self.subjectId), str(
self.custom_option), str(len(tmp_barcode_list))))
self.cb_option_type.setCurrentIndex(0)
self.plain_console.repaint()
self.plain_console.moveCursor(QTextCursor.End)