def getPermutated(self, skip_weight_check=False):
shuffle_list = []
for i, item in enumerate(self.seqList):
if skip_weight_check or self.seqList[i][3] > 0:
shuffle_list.append(i)
new_list = UtilityFunctions.shuffle_list(shuffle_list)
permutated_list = []
for i, item in enumerate(new_list):
name = self.seqList[item][0]
path = self.seqList[item][1]
myClass = self._getClass(name, path)
if myClass is not None:
if issubclass(myClass, Sequence):
key = name + path
if key not in self.seqDict:
mySeq = self._generateSeqInstance(myClass)
self.seqDict[key] = mySeq
permutated_list.append(mySeq)
else:
permutated_list.append(self.seqDict[key])
elif issubclass(myClass, SequenceLibrary):
seq_lib = self._generateSeqLibInstance(myClass)
for seq in seq_lib.getPermutated(skip_weight_check):
yield seq
for seq in permutated_list:
yield seq
def shuffleList(self, myList):
warnings.warn(
"Sequence.shuffleList() is deprecated; please use UtilityFunctions.shuffle_list()",
DeprecationWarning,
)
return UtilityFunctions.shuffle_list(myList)
def getPermutated(self, skip_weight_check=False):
filtered_list = self.seqList
if not skip_weight_check:
filtered_list = filter(lambda item: item[3] > 0, filtered_list)
shuffled_list = UtilityFunctions.shuffle_list(filtered_list)
for item in shuffled_list:
name = item[0]
path = item[1]
yield from self._getPermutatedFromName(name, path, skip_weight_check)