def __init__(self, mention, useAnnotations=False):
""" initialize population template given an age mention
if useAnnotation == True, then search the phrase for annotated
age values and use those. Otherwise, use heuristics to identify
age values. """
BaseMentionTemplate.__init__(self, mention, 'age')
self.values = {}
self.trueValues = {}
self.nDiscardedValues = 0
if useAnnotations:
self.findAnnotatedValues(isGroundTruth=False)
else:
self.findDetectedValues()
self.findAnnotatedValues(isGroundTruth=True)
def __init__(self, mention):
""" initialize population template given a population mention """
BaseMentionTemplate.__init__(self, mention, 'time')
self.value = 0
self.units = ''
for token in mention.tokens:
if token.isNumber():
# assume this number is the number of days, weeks, etc
if token.isInteger():
self.value = int(token.text)
else:
self.value = float(token.text)
if token.text in self.unitSet:
self.units = self.unitSet[token.text]
def __init__(self, mention, useAnnotations=False):
""" initialize population template given an age mention
if useAnnotation == True, then search the phrase for annotated
age values and use those. Otherwise, use heuristics to identify
age values. """
BaseMentionTemplate.__init__(self, mention, 'age')
self.values = {}
self.trueValues = {}
self.nDiscardedValues = 0
if useAnnotations:
self.findAnnotatedValues(isGroundTruth=False)
else:
self.findDetectedValues()
self.findAnnotatedValues(isGroundTruth=True)
def __init__(self, mention, useAnnotations=False):
""" initialize group template given a group mention """
BaseMentionTemplate.__init__(self, mention, 'group', useAnnotations)
self.sizes = []
self.outcomeNumbers = []
self.costValues = []
self.eventrates = []
self.role = 'unknown'
self.groupSizeEvaluation = Evaluation()
if useAnnotations:
for token in self.mention.tokens:
groupRole = token.getAnnotationAttribute(self.type, 'role')
if groupRole == 'control':
self.role = groupRole
elif groupRole == 'experiment':
self.role = groupRole
else:
if self.isControl():
self.role = 'control'
if self.isExperiment():
self.role = 'experiment'
def __init__(self, mention, useAnnotations=False):
""" initialize group template given a group mention """
BaseMentionTemplate.__init__(self, mention, "group", useAnnotations)
self.sizes = []
self.outcomeNumbers = []
self.costValues = []
self.eventrates = []
self.role = "unknown"
self.groupSizeEvaluation = Evaluation()
if useAnnotations:
for token in self.mention.tokens:
groupRole = token.getAnnotationAttribute(self.type, "role")
if groupRole == "control":
self.role = groupRole
elif groupRole == "experiment":
self.role = groupRole
else:
if self.isControl():
self.role = "control"
if self.isExperiment():
self.role = "experiment"
def __init__(self, mention): """ initialize population template given a population mention """ BaseMentionTemplate.__init__(self, mention, 'location')
def setId(self, id): """ set the ID for this condition """ id = 'c'+id BaseMentionTemplate.setId(self, id)
def __init__(self, mention, useAnnotations=False): """ initialize condition template given a condition mention """ BaseMentionTemplate.__init__(self, mention, 'condition', useAnnotations)
def write(self, out):
""" write contents of template to output stream """
BaseMentionTemplate.write(self, out)
def __init__(self, mention):
""" initialize population template given a population mention """
BaseMentionTemplate.__init__(self, mention, 'location')
def write(self, out):
""" write contents of template to output stream """
BaseMentionTemplate.write(self, out)
def setId(self, id):
""" set the ID for this group """
id = 'g' + id
BaseMentionTemplate.setId(self, id)
def partialSetMatch(self, mTemplate, ignoreSemanticTagList=["people"]):
""" return number of tokens matched if the root template in this cluster is a partial match
for the root template from another cluster. """
return BaseMentionTemplate.partialSetMatch(self, mTemplate, ignoreSemanticTagList)
def exactSetMatch(self, mTemplate, ignoreSemanticTagList=["people"]):
""" return True if the token sets from a given mention template match
the token set from this templates. """
return BaseMentionTemplate.exactSetMatch(self, mTemplate, ignoreSemanticTagList)
def __init__(self, mention, useAnnotations=False):
""" initialize condition template given a condition mention """
BaseMentionTemplate.__init__(self, mention, 'condition',
useAnnotations)
def setId(self, id):
""" set the ID for this condition """
id = 'c' + id
BaseMentionTemplate.setId(self, id)
def exactSetMatch(self, mTemplate, ignoreSemanticTagList=['people']):
""" return True if the token sets from a given mention template match
the token set from this templates. """
return BaseMentionTemplate.exactSetMatch(self, mTemplate,
ignoreSemanticTagList)
def partialSetMatch(self, mTemplate, ignoreSemanticTagList=['people']):
""" return number of tokens matched if the root template in this cluster is a partial match
for the root template from another cluster. """
return BaseMentionTemplate.partialSetMatch(self, mTemplate,
ignoreSemanticTagList)
def setId(self, id):
""" set the ID for this group """
id = "g" + id
BaseMentionTemplate.setId(self, id)