def __init__(self, token, quantityType): """ initialize template given a token containing a quantity """ BaseTemplate.__init__(self, quantityType) self.token = token self.time = None self.start = self.token.index self.end = self.token.index self.value = token.getValue()
def __init__(self, token, quantityType):
""" initialize template given a token containing a quantity """
BaseTemplate.__init__(self, quantityType)
self.token = token
self.time = None
self.start = self.token.index
self.end = self.token.index
self.value = token.getValue()
def __init__(self, mention, mentionType, useAnnotations=False):
""" initialize template given a mention """
BaseTemplate.__init__(self, mentionType)
self.mention = mention
self.start = mention.start
self.end = mention.end
self.id = ''
self.annotatedId = ''
self.parent = None
self.children = []
self.matched = False
self.exactMatch = False
self.matchedTemplate = None
self.outcomeMeasurements = []
if self.mention.matchedMention != None or useAnnotations:
if useAnnotations:
annotatedMention = self.mention
else:
annotatedMention = self.mention.matchedMention
# this mention has already been matched to an annotated mention
# use the id from that mention
for token in annotatedMention.tokens:
# find first token with an id
id = token.getAnnotationAttribute(self.type, 'id')
if len(id) > 0:
self.annotatedId = id
break
self.name = self.mention.text.strip()
self.umlsCodes = set([])
self.snomedCodes = set([])
for token in mention.tokens:
for uc in token.umlsConcepts:
self.umlsCodes.add(uc.id)
if len(uc.snomed) > 0:
self.snomedCodes.add(uc.snomed)
def __init__(self, mention, mentionType, useAnnotations=False):
""" initialize template given a mention """
BaseTemplate.__init__(self, mentionType)
self.mention = mention
self.start = mention.start
self.end = mention.end
self.id = ''
self.annotatedId = ''
self.parent = None
self.children = []
self.matched = False
self.exactMatch = False
self.matchedTemplate = None
self.outcomeMeasurements = []
if self.mention.matchedMention != None or useAnnotations:
if useAnnotations:
annotatedMention = self.mention
else:
annotatedMention = self.mention.matchedMention
# this mention has already been matched to an annotated mention
# use the id from that mention
for token in annotatedMention.tokens:
# find first token with an id
id = token.getAnnotationAttribute(self.type, 'id')
if len(id) > 0:
self.annotatedId = id
break
self.name = self.mention.text.strip()
self.umlsCodes = set([])
self.snomedCodes = set([])
for token in mention.tokens:
for uc in token.umlsConcepts:
self.umlsCodes.add(uc.id)
if len(uc.snomed) > 0:
self.snomedCodes.add(uc.snomed)
