def main():
try:
require_python_version('2.6', 'Version 2.6 is required for shutil ignorefiles copy functionality.')
arguments = parse_arguments(sys.argv[1:])
visitdir = Visit_directory(arguments['subid'], arguments['raw_scans_directory'], arguments['processed_scans_directory'])
visitdir.prepare_working_directory(visitdir.working_directory)
visitdir.parse_scans_and_create_directory_index()
visitdir.preprocess_each_scan()
if arguments["cleanup"]: visitdir.tidy_up()
except IOError as e:
print "There was an IO error in processing:"; print e
def main():
t = TransferTask(sys.argv[1:])
t.set_process_pool(t.study_vars)
t.check_paths()
if 'doTransfer' in t.process_pool: t.transfer()
if 'doCreateIndexFile' in t.process_pool or 'doAnatRecon' in t.process_pool:
visitdir = Visit_directory(t.subid, t.anatomicals_directory,
t.processed_scans_directory)
visitdir.prepare_working_directory(visitdir.working_directory)
if 'doCreateIndexFile' in t.process_pool:
visitdir.parse_scans_and_create_directory_index()
if 'doAnatRecon' in t.process_pool: visitdir.preprocess_each_scan()
def main():
t = TransferTask(sys.argv[1:])
t.set_process_pool(t.study_vars)
t.check_paths()
if 'doTransfer' in t.process_pool: t.transfer()
if 'doCreateIndexFile' in t.process_pool or 'doAnatRecon' in t.process_pool:
visitdir = Visit_directory(t.subid, t.anatomicals_directory, t.processed_scans_directory)
visitdir.prepare_working_directory(visitdir.working_directory)
if 'doCreateIndexFile' in t.process_pool: visitdir.parse_scans_and_create_directory_index()
if 'doAnatRecon' in t.process_pool: visitdir.preprocess_each_scan()