def _add_versions(samples):
"""Add tool and data versions to the summary.
"""
samples[0]["versions"] = {
"tools": programs.write_versions(samples[0]["dirs"],
samples[0]["config"]),
"data": provenancedata.write_versions(samples[0]["dirs"], samples)
}
return samples
def _add_provenance(items, dirs, config, add_provenance=True):
if add_provenance:
p = programs.write_versions(dirs, config=config)
d = provenancedata.write_versions(dirs, items)
versioncheck.testall(items)
p_db = diagnostics.initialize(dirs)
out = []
for item in items:
if add_provenance:
entity_id = diagnostics.store_entity(item)
item["config"]["resources"]["program_versions"] = p
item["provenance"] = {"programs": p, "entity": entity_id,
"db": p_db, "data": d}
out.append([item])
return out
def _add_provenance(items, dirs, config, add_provenance=True):
if add_provenance:
p = programs.write_versions(dirs, config=config)
d = provenancedata.write_versions(dirs, items)
versioncheck.testall(items)
p_db = diagnostics.initialize(dirs)
out = []
for item in items:
if add_provenance:
entity_id = diagnostics.store_entity(item)
item["config"]["resources"]["program_versions"] = p
item["provenance"] = {"programs": p, "entity": entity_id,
"db": p_db, "data": d}
out.append([item])
return out
def _add_versions(samples):
"""Add tool and data versions to the summary.
"""
samples[0]["versions"] = {"tools": programs.write_versions(samples[0]["dirs"], samples[0]["config"]),
"data": provenancedata.write_versions(samples[0]["dirs"], samples)}
return samples
