def test_load_indexed_bam(self):
readsPath = self.resourceFile("indexed_bams/sorted.bam")
ac = ADAMContext(self.ss)
querys = [ReferenceRegion("chr2", 100, 101), ReferenceRegion("3", 10, 17)]
reads = ac.loadIndexedBam(readsPath, querys)
self.assertEqual(reads.toDF().count(), 2)
def test_load_indexed_bam(self):
testFile = self.resourceFile("indexed_bams/sorted.bam")
ac = ADAMContext(self.ss)
reads = ac.loadIndexedBam(testFile,
[ReferenceRegion("chr2", 100, 101),
ReferenceRegion("3", 10, 17)])
self.assertEqual(reads.toDF().count(), 2)
def test_load_indexed_bam(self):
readsPath = self.resourceFile("indexed_bams/sorted.bam")
ac = ADAMContext(self.ss)
querys = [
ReferenceRegion("chr2", 100L, 101L),
ReferenceRegion("3", 10L, 17L)
]
reads = ac.loadIndexedBam(readsPath, querys)
self.assertEquals(reads.toDF().count(), 2)
